Sphingopyxis sp. BSN-002: L7H23_02690
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Entry
L7H23_02690 CDS
T10439
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03030
DNA replication
spbs03430
Mismatch repair
spbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L7H23_02690 (dnaE)
03430 Mismatch repair
L7H23_02690 (dnaE)
03440 Homologous recombination
L7H23_02690 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spbs03032
]
L7H23_02690 (dnaE)
03400 DNA repair and recombination proteins [BR:
spbs03400
]
L7H23_02690 (dnaE)
Enzymes [BR:
spbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L7H23_02690 (dnaE)
DNA replication proteins [BR:
spbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L7H23_02690 (dnaE)
DNA repair and recombination proteins [BR:
spbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L7H23_02690 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
UKK85033
LinkDB
All DBs
Position
complement(515835..519323)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAYSPFVPLRVFSSFTMLEGAIEPKAIAKAARERGFPAIAVADRNGLYGVMAFGEACKAA
GVQPIVGAFLSVARPGQRLANGAPLIDWLALYAQDDAGYNNLCALVSAAHLGRPVEQDPH
VTLADLAGKTDGLICLTGGGEGALARLLAGEQKTAAEDYVEQLEALFGGRLYIELSRRGD
ATEAAAENALIDLAYARALPMVATNPANFVEPQFHPAHDAMLCIAQSAYVESEDRRVSSP
EAWLKPAEAMEDAFSDLPEAMHNTLVIAQRCAFMAPKRKPILPSLAGDREGEAAQLKADA
HAGLEARLALHPDLSAEEREAYVTRLDFEVDVITQMGFPGYFLIVADFIKWAKAHDIPVG
PGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQ
EKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERALNG
VSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMP
VTQFDMKYVETAGLVKFDFLGLKTLSVLKEAKRLLALRGVDVDLDALAWDDTAVYELLQR
GETVGVFQLESEGMRRTLSAVKPTNFGDIIALVALYRPGPMDNIPLFGARKNGREKIAYP
HPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVQAEMDAQRDTFVK
GCGEHNGIDAKAANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKAHYPHEFFAASMS
FDSHQTDKLSIFIDDMRRLGVDVSAPSINESEADFSVGRGDEGLTVRYALGALKGVGEKA
MEALAAERHAKGDFASLDDFAARIDPKLLNRRQIEALAAGGAFDCIEPDRPRAYAGAEAL
LACANSSAHERSTGQGGLFGGDVAIMPVLQLPAAEPWTLAERMTREKEAFGFYFSAHPVE
QFEAIVAARGARSYGDICENVEMTPGTRIPMVMAAMVESARPRVSQRGNRFLNLTLSDRS
GQFQSSCFDEQAGKILEALAEDGGCAILSVELDLLEGEETPRVTVRGAQALADIAATAAL
QLTCRVELPEAMAEIAKLLERRDDARGKMIVATRDPLTDEDIRIELGNRFALGPDTVSRL
EMISGVTEPALSLVAPRDFRVR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggcctacagccccttcgttcccctgcgcgtcttttccagtttcacgatgctggagggg
gcgatcgagcccaaggcgattgcgaaagccgcgcgcgagcgcggttttccggcgatcgcg
gtcgccgatcgcaacgggctctatggtgtcatggcctttggcgaggcgtgcaaggcggcg
ggtgttcagccgatcgtcggcgccttcctgagcgtcgcgcggccggggcagcggctggca
aacggcgcgccgctcatcgactggctggcgctctatgcgcaggacgatgcgggctataac
aatctctgcgcgctggtttcggcggcgcatctcgggcggccggtcgagcaggacccgcat
gtcacgctggcggaccttgccggcaagaccgacgggctgatctgtctgaccggcggcggc
gagggcgcgctggcgcgactgctcgcgggcgagcagaagaccgcggccgaggattatgtc
gagcagctcgaagccttgttcggcgggcggctttatatcgagctgtcgcggcgcggcgac
gcgaccgaggcggcggccgagaatgcgctgatcgacctggcctacgcgcgcgcgctgccc
atggttgcgacgaaccctgcgaacttcgtcgagccgcaattccatcccgcgcacgatgcg
atgctgtgcatcgcgcagtcggcttatgtcgagagcgaggaccggcgcgtgtcgagcccc
gaggcgtggctgaagcccgccgaggcgatggaggatgcgttcagcgacctgcccgaggcg
atgcacaacacgctggtgatcgcgcagcgttgcgcgttcatggcgccgaagcgcaagccg
atcctgccgagcctcgcgggcgaccgcgagggcgaggcggcgcagcttaaggccgacgcg
catgcggggctggaagcgcgcttggcgcttcatcccgacctgtcggccgaggaacgcgaa
gcctatgtgacgcgcctcgatttcgaggtcgacgtcatcacccagatgggctttcccggt
tacttcctgatcgttgccgacttcatcaaatgggcgaaggcgcatgacattccggtcgga
ccggggcgcgggtcgggtgcgggcagcgtcgtcgcgtgggcgctgacgatcaccgacctc
gatccgttgaagcttggcctgctgttcgaacgcttcctcaaccccgagcgcgtgtcgatg
cccgacttcgacatcgacttctgcgaaacgcggcgcggcgaagtgatccgctatgtgcag
gagaaatacggccgcgacaccgtcgcgcagatcatcaccttcggtaagctgaaggcgcgc
gcggttctaaaggatactggccgcgtgctccagatgagctatggtcaggtcgaccggctc
gcgaagctggttccgaaccatccgaccgacccctggacgctcgaacgcgcgttgaacggc
gtttcggagctgatgaccgaatataagcaggacgacggggtacgccgcctgttcgacatg
gcacgccagctcgaaggtctgccgcgacacagctcgacgcacgccgcaggcgtggtgatc
ggcgaccggccgctcgaccagctcgtcccgctctatcgcgatccgcgctcggacatgccg
gtgacgcagttcgacatgaaatatgtcgagactgcggggctggtgaagttcgacttcctc
ggtctcaagacgctgtcggtgctgaaggaggcgaagcgcctgctcgcgctgcgcggcgtc
gacgtcgatctcgacgcgctcgcgtgggacgatacggcggtttacgagctgctccagcgc
ggcgagaccgtgggggtattccagctggaatccgaagggatgcggcgtacgctgtcggcg
gtgaagcccaccaatttcggcgacatcatcgcgctcgtcgcgctctatcggccggggccg
atggacaacatcccgctgttcggcgcgcgcaagaacgggcgcgaaaagatcgcctatccg
cacccgttgctcgaaggcatcctcgccgaaacctatggcatcttcgtctatcaggaacag
gtgatgcaggcggcgcagatcctcgccggctacagccttggcggcgccgaccttctccgc
cgcgcgatgggcaagaaggtgcaggcggagatggacgcgcagcgcgacaccttcgtcaag
ggctgtggcgagcataacggcatcgacgcaaaggctgcgaacgagctgttcgacttgatc
gacaagttcgcgggctatggtttcaacaagagccatgcggccgcctatgcgctgctgtcg
tatcagaccgcctggctcaaagcgcattatccgcacgaattcttcgcggcgtcgatgtcg
ttcgacagccatcagaccgacaagctgtcgatcttcatcgacgacatgcggcggctgggc
gtcgatgtgtcggcgccgtcgatcaacgagagcgaagccgatttttcggtcgggcgcggc
gatgaggggctgacggtacgctatgcgctcggcgcgctgaagggcgtcggcgagaaggcg
atggaggcacttgctgccgagcgccatgcgaagggcgattttgcgagcctcgacgatttt
gcggcgcgcatcgatccgaagctgctcaaccggcgccagatcgaggcgctggccgctggc
ggagcgttcgattgcatcgagcctgatcggccgcgcgcctatgccggcgctgaagccctg
ctcgcgtgcgcgaacagttcggcgcacgagcggtcgacggggcagggcgggctgttcggc
ggcgatgtcgcgattatgccggtgcttcagcttccggcggccgagccgtggacgctcgcc
gagcggatgacgcgcgaaaaggaggcgttcggcttctatttctcggcgcacccggtcgaa
cagtttgaggcgatcgtcgctgcacgcggcgcgcggtcctacggtgacatttgcgagaat
gtcgaaatgacgccgggaacgcgcatccccatggtgatggcggcgatggtcgaaagcgcg
cgcccgcgcgtgtcgcagcgcggcaaccgcttcctgaacctcacgctttcggatcgcagc
gggcaattccagtcgagctgtttcgacgaacaggcgggcaagatactcgaagcgctggcc
gaagatggcggctgcgcgatcctgtcggtcgagctcgacctgctcgaaggcgaagaaacg
ccgcgtgtcaccgtgcgcggcgcgcaggcgctcgccgacatcgcggcgacggcggcattg
cagctgacgtgccgtgtcgagctgcccgaggcgatggccgaaatcgcgaagctgctcgag
aggcgcgacgatgcgcgcggcaagatgatcgtcgcgacgcgcgatccgctgactgacgag
gacatccggatcgaactggggaatcgcttcgcgctcggccccgacaccgtctcgcggctc
gaaatgatttccggggtgaccgagcccgcattgtcgctcgttgctccgcgcgatttccgg
gtgcgatag
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