Sphingopyxis sp. BSN-002: L7H23_06275
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Entry
L7H23_06275 CDS
T10439
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L7H23_06275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spbs03019
]
L7H23_06275
Enzymes [BR:
spbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L7H23_06275
Messenger RNA biogenesis [BR:
spbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L7H23_06275
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Helicase_C_2
ERCC3_RAD25_C
CMS1
MerR-DNA-bind
Motif
Other DBs
NCBI-ProteinID:
UKK85709
LinkDB
All DBs
Position
complement(1262958..1264352)
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AA seq
464 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKDYTVPTPIQMQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLLTYPHQATPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVTTVFGGVPINKQIR
DLSRGVDILVATPGRLLDLVDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRIAKLLPSR
RQNLFFSATMPKEIAHLAEQFLEDPVTVSVAPQATTAEKIRQFATFVEQKEKQALLTAVV
NRENIDRALIFTRTKHGADRVVRHLAGAKIKAMAIHGNKSQSQRTHALQAFRSGEIKLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFIAPDERPNMRDI
ERVTRTKSEPMPLPDNFNELVRNLPKPVQPPRDTGSQGRNPQRQRDEALAGRGENNRGGQ
QPRGDRGPRRDNAGAADGQPQRKRRFRPHRGKVGAHKGAVKRVG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacgactttcaacgactttggcctgcacgccgacatcaatcgcgcgcttgccgccaag
gattatacggtcccgaccccgatccagatgcaggcgatcccgccgctgatgaagggccgc
gacctgtgcggtatcgcgcagaccggcaccggcaagaccgccggtttctcgctgccgtcg
atccaccaccttctgacctacccgcatcaggcgaccccgcgcggttgccggatgctcgtg
ctcgcgccgacgcgcgaactggccgcgcagatcgctcagagctgccgcgattatggtcgc
tttaccaagctgtcggtgacgacggtcttcggcggcgtgccgatcaacaaacagatccgc
gacctttcgcgcggggtcgatatccttgtcgcaaccccgggccgtctgctcgacctggtc
gaccagcgcgcactgcgcctcgacgacgtcgaaatcttcgttctcgacgaagccgaccag
atgatggacatgggcttcatccactcgctgcgccgcatcgccaagctgctgccgtcgcgc
cgccagaacctgttcttctcggcgacgatgccgaaggaaatcgcgcacctcgccgagcag
ttcctcgaagatcccgtcaccgtgtcggtcgccccgcaggcgacgaccgccgaaaagatc
cgccagttcgcgacctttgtcgaacagaaggaaaagcaggcactgctgaccgcggtcgtg
aaccgcgagaatatcgaccgtgcgctgatcttcacccgcaccaagcatggcgccgaccgc
gtcgtgcgccatctggccggtgcgaagatcaaggctatggcgatccatggcaacaagagc
cagtcgcagcgcacccacgcgctgcaggcgttccgctcgggcgagatcaagctgctcgtc
gcgaccgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtcatcaatttc
gagattccgaacgttcccgaacaatatgtccatcgcatcggccgcaccgcgcgcgccggc
gccgagggcgttgcgatcagcttcatcgctcccgacgagcgccccaatatgcgcgacatc
gagcgcgtgacgcgcaccaagtcggagccgatgccgttgcccgataacttcaacgaactg
gtgcgcaacctcccgaagccggtgcagccgccgcgcgacaccggcagccagggccgcaac
ccgcagcgccagcgcgatgaagcgctcgccggtcgcggcgagaacaaccgtggcggccag
cagccgcgcggtgatcgcggcccgcgccgcgacaatgccggcgccgctgacggccagccg
cagcgcaagcgtcgtttccgcccgcatcgcggcaaggtcggcgcgcacaagggcgcggtg
aagcgcgtgggttaa
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