Sphingopyxis sp. BSN-002: L7H23_07670
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Entry
L7H23_07670 CDS
T10439
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spbs Sphingopyxis sp. BSN-002
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spbs03032
]
L7H23_07670
03400 DNA repair and recombination proteins [BR:
spbs03400
]
L7H23_07670
Enzymes [BR:
spbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
L7H23_07670
DNA replication proteins [BR:
spbs03032
]
Prokaryotic type
DNA Topoisomerases
L7H23_07670
DNA repair and recombination proteins [BR:
spbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
L7H23_07670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
RHS_repeat
Motif
Other DBs
NCBI-ProteinID:
UKK85971
LinkDB
All DBs
Position
1543722..1544732
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AA seq
336 aa
AA seq
DB search
MSAERLIHVDDSLPGISRERSGVGWKYRDARGRLIRGRDEIDRLNAIALPPAYEDAWFCP
APNGHILATGYDARGRKQYRYHPEFRLAQEVDKYDRCAAFGHALPLLRARLADDLARRTL
CQERIVGAVVRLLDLAALRVGNEEYAVANKSFGATTLRQRHARISGRTLRLSYRAKSGAK
KDVTISDRNLATLVRRLQDLPGQNLFQYQDGDDLCAVGSGDVNAYIREAMGDAFSAKHFR
TWSASVEAFTFLHGAPEAPTLKAMLAHVADRLGNTPAVARKAYVHPAMIAAAQERGNFAA
DAGPLPRATRYLSRYERGFLAWLERAPGAAALLRSA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgaacgcctgatccacgtcgacgacagcttgcccggcatcagccgcgagcgc
tcgggcgtcggctggaagtatcgcgacgccaggggcaggcttattcgcggccgcgacgag
atcgatcgactcaatgcgatcgcgctgccgcccgcctatgaggatgcgtggttctgcccg
gcgccgaatggccatatcctcgccaccggatatgacgcgcgcgggcgcaagcaatatcgc
tatcaccccgaattccgcctcgcgcaggaggtcgacaaatatgaccgctgcgccgccttc
ggccatgcgctgcccttgctccgcgcccggctggccgacgatctggcgcggcggacgctg
tgtcaggaacggatcgtcggcgcggtggtgcggctgctcgatcttgcggcgctccgcgtc
ggcaacgaagaatatgccgtcgcaaacaagagcttcggcgcgacgacattgcgccagcgc
cacgccagaatctcggggcggacgctccgcctcagctaccgcgcgaaaagcggtgcgaaa
aaggatgtcacgatcagcgatcgcaatctggcgacgctcgtccgccggctgcaggatctg
cccgggcagaatctcttccagtatcaggatggcgacgatctctgcgcggtcgggtcgggg
gacgtgaatgcctatatccgcgaagcgatgggcgacgcgttcagcgccaagcatttccgc
acctggtcggcgagcgtcgaggcgttcacctttcttcacggcgcacccgaagcgccgacg
ctgaaggcgatgctcgcgcacgtcgccgaccggctcggcaacacgccggcggtcgcgcgc
aaggcttatgttcacccggcgatgattgcggccgcgcaggagcgaggaaatttcgccgca
gacgccgggccgctgccgcgggcgaccagatatctctcgcgctacgagcgcggctttctc
gcctggctcgaacgcgcgcccggtgccgcggcgttgcttcgctccgcctga
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