Sphingopyxis sp. BSN-002: L7H23_09285
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Entry
L7H23_09285 CDS
T10439
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L7H23_09285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spbs03019
]
L7H23_09285
03009 Ribosome biogenesis [BR:
spbs03009
]
L7H23_09285
Enzymes [BR:
spbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L7H23_09285
Messenger RNA biogenesis [BR:
spbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L7H23_09285
Ribosome biogenesis [BR:
spbs03009
]
Prokaryotic type
rRNA processing factors
L7H23_09285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
UKK82770
LinkDB
All DBs
Position
1876628..1879216
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AA seq
862 aa
AA seq
DB search
MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAAAAQRAEDDLDELEGDVADVEY
HDDDNGDAPPAPETVGEDDGEEHDDAEDNGDGEAEEGGEEGSEESREGRGDRRRGRGKGG
RNGRKGGRGRRNDEEDGGENRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYL
SLAGRYCVLMPNTMHGGGISRKISNGADRRKLKAMIDELALPPTMGCIVRTAGMSRTKVE
IKRDFDYLARLWDEIRQKTLESSAPALVHSDSDLVKRAIRDIYHKDIEEVLVEGDEGYKA
AKQFMKLLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALV
SIDINSGRSTREHNIEQTALNTNLEAAHEIARQLRLRDMAGLVVIDFIDMDHGSNVRKVE
RAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAG
LSALRLIEEEAARGKGSRITLRASQEATFYLLNEKRRELREIEELYGVTVEILPDGETEG
ARMAVEVSGPPPIARRSFAPIVEIEEEEDDFVEEDEEEEGEEEEAEERPARRERQERQEG
EDGEGRKRRRRRRRGRRGRRDEEGGDASEGDAPASDDSDEAADEAPVEEAVAAEAEEAEA
KPKRRRGGRGRKKVDEAEAEAVTEEAAPAEATPEPAADEAPATEEKPKRKRAPRKTKAAA
AAEAATEDAVEAPAVEAPVEAEPEAAKPAPKKRASRAKKAVAAEAAAEPATAGDAEPVAA
EAGSEGDDGEPRRGWWQRTFGN
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgttgatcgacgcgcggcaccgggaagagacccgggtcgccgtcacc
aagggaaaccgcatcgaggagtttgatttcgagtctgccgagcacaagcagctcaaaggc
aatatctatctggccaaggttacccgcgtcgaaccgtccctgcaggcggcgttcgtcgaa
tatggcggcaatcgccacggcttcctggccttcagcgaaatccatcccgactattaccag
atcccgaaagaagatcgcgaagccctgctccgcgaggaagccgaacatgccgccgccgcg
gcgcagcgcgccgaggatgacctcgacgagctcgagggcgatgttgccgacgtcgaatat
catgacgacgacaatggcgacgccccgcccgcgcccgaaaccgtcggtgaagacgatggc
gaagagcatgacgacgccgaagacaatggcgacggcgaggccgaagaaggcggcgaggag
ggctctgaagaatcgcgcgaagggcgcggtgatcgccgccgcggccgcggcaagggcggg
cgcaacggtcgcaagggcggccgcgggcgccggaacgacgaagaggacggcggcgaaaac
cgcatgtccctgcgtcgccgctacaagatccaggacgtcatccgtcgccgtcaggtgatg
ctggtgcaggtcgtcaaggaagaacgcggcaacaagggcgctgcgctcaccacctatctg
tcgctcgccggccgctattgcgtgctgatgccgaacacgatgcatggcggcgggatcagc
cgcaagatttcgaacggcgccgatcgccgcaagctgaaggcgatgatcgacgaactcgca
ctgccgccgacgatgggctgcatcgtccgcaccgctgggatgagccgcaccaaggtcgag
atcaagcgcgacttcgattacctcgcccgcctgtgggacgagattcgtcaaaaaacgctc
gaatcgagcgcacccgcgctggtccattcggacagcgaccttgtgaagcgcgcgatccgc
gacatctatcacaaggatatcgaggaagtcctcgtcgagggcgacgaggggtacaaggcc
gccaagcagttcatgaagctgctgatgcccagccacgcgcgacgcgtgaagcaatatgcc
gaccccgtctcgctctatcagcgctatggcgtcgaggatcagctcgcggggatgctgaat
cccgtcgtccagctgaaatcgggcggttatctcgtaatcaacccgaccgaggcgctggtg
tcgatcgacatcaactcgggccgctcgacgcgcgagcataatatcgagcagaccgcgctc
aacaccaacctcgaggccgcgcacgaaatcgcgcgccagctgcgtctgcgcgacatggcc
ggccttgtcgtgatcgacttcatcgacatggatcatggctcgaacgtccgcaaggtcgag
cgcgcgatgaaggatgcgctcaagaacgaccgtgcccgcatccaggtcggccgtatctcg
ggcttcggcctgatggagatgagccgccagcgcctgcggaccggcgtgctcgaagcatcg
acgcgcccctgcccgcattgcgaaggcaccggtctcgtccgcaccgccagctcggcgggc
ctcagcgcgctgcgcctgatcgaagaggaagccgcgcgcggcaagggcagccggatcacg
ctgcgcgcgagccaggaagccaccttctacctccttaacgaaaagcgccgcgaactgcgc
gagatcgaggagttgtacggcgttacggtcgagatcctgcccgacggcgagaccgaaggc
gcgcgcatggcggttgaagtcagcggtccgccgccgatcgcgcgccgcagctttgccccg
atcgtcgagatcgaggaagaggaagacgacttcgtcgaagaggacgaggaagaagaaggc
gaagaagaggaggccgaagagcgccccgcacgccgtgaacggcaggagcgtcaggaaggc
gaggacggcgaaggccgcaagcgccgtcgccggcgtcgccgtggtcgtcgtggtcgccgc
gatgaagaaggtggcgatgcgtccgagggcgatgcaccggcttcggatgacagtgacgag
gctgccgacgaagcgccggtcgaagaggccgtagctgcggaagccgaagaggcagaggcc
aagcccaagcgccgccgtggcggtcgcggtcgcaagaaggtcgacgaagccgaggcggaa
gccgtgacggaagaagctgctccagccgaagcgacgcccgagcccgcagccgacgaggcg
cccgccaccgaagaaaagccgaagcgcaagcgcgctccgcgcaagaccaaggccgccgcg
gccgccgaggccgccacggaggacgctgtcgaagcgccggcggtcgaggctccggtcgaa
gccgaacccgaagccgccaagccggcgccgaagaagcgcgcgagccgggcgaagaaggcc
gtcgccgccgaagcggcagccgagcctgcgaccgcgggtgacgcggagccggtcgcggcg
gaagccgggagcgagggtgacgacggcgaaccgcgccgtggctggtggcagcgcaccttc
ggcaactga
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