Sphingopyxis sp. BSN-002: L7H23_09960
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Entry
L7H23_09960 CDS
T10439
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
spbs Sphingopyxis sp. BSN-002
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spbs03032
]
L7H23_09960 (gyrB)
03400 DNA repair and recombination proteins [BR:
spbs03400
]
L7H23_09960 (gyrB)
Enzymes [BR:
spbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
L7H23_09960 (gyrB)
DNA replication proteins [BR:
spbs03032
]
Prokaryotic type
DNA Topoisomerases
L7H23_09960 (gyrB)
DNA repair and recombination proteins [BR:
spbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
L7H23_09960 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
UKK82896
LinkDB
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Position
2032330..2034873
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AA seq
847 aa
AA seq
DB search
MTDTPETGAPESASKQPNTNAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEV
SDNAIDEALAGHCDLVLITLNSDGSVSVEDNGRGIPTGIHAEEGISAAEVIMTQLHAGGK
FENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRDGEEHWMRFEHGDSVAPLKVNGP
APAGKKGTRVTFQASTETFKNVTEFDFEKLEHRYRELAFLNSGVRIKIVDARHAEHVAHD
LFYEGGIAAFVKYLDRNKTALLPDPIAISSERDGIGIDVALEWNDSYYENVLCFTNNIPQ
RDGGTHLAAFRAALTRTLNGYGEKSGMLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQ
TKDKLVSSEVRQPLESLMADRMTEWLEENPAHAKAVIQKVIDAAAAREAAKKARELTRRK
GAMDIASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRHVQAILPLKGKILNVER
ARFDRIISSKEVGTLIQALGTGIRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR
QMPEIIENGHLYIAQPPLYKVAKGRSEVYLKDDTALENYLVDGGIDALLLETPGGARSGN
DLRDLIEHGRRLRALMRYVPRSLNHGLVEALAFAGALDPDLDTAGRHSAAATSATWLNAA
EGALTGGGEAVWTVEAVEGGGYTLERRWRGVSDLHAVDAAFLQSQEARRLHKLASEQAET
YARPGRLVKASGAAAVEVETAEGEEEDVPAATNAKAIPVTRPSELLDAIFAHSRKGLAVS
RYKGLGEMNAEQLWETTLDPSNRSLLRVRTEQADVADGIFEQLMGDEVEPRRDFIQTNAL
SVANLDV
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgacagatacgcccgaaaccggcgcgcccgagagcgcctccaaacagcccaacaccaac
gcttatggcgccgattcgatcaaggtcctcaagggtctcgacgcggtgcgcaagcgcccc
ggcatgtatatcggcgacaccgacgacgggtcgggcctgcaccatatggtgttcgaggtg
tcggacaatgcgatcgacgaagcgctcgcggggcactgcgacctcgtcctgatcacgctc
aacagcgacggatcggtcagcgtcgaggacaacggtcgcggcattccgaccggcatccac
gccgaggaaggcatttcggcggccgaggtcatcatgacccagctccacgcgggcgggaag
ttcgagaacaccagcgacgacaatgcctacaaggtgtcgggcggcctgcacggcgtcggc
gtttcggtcgtcaacgcgctgtcagaatggctggaactgacgatctggcgcgacggcgaa
gagcattggatgcgcttcgaacatggcgattcggtcgccccgctgaaggtcaacggcccc
gccccggcgggcaagaagggcacgcgcgtgacctttcaggcgtcgaccgagacgttcaaa
aatgtcaccgaattcgatttcgagaagctcgagcatcgctaccgcgagctcgccttcctg
aactcgggcgtccgcatcaagatcgtcgatgcgcgccacgccgagcatgtcgcgcacgac
ctgttctatgagggcgggatcgcggcgttcgtcaaatatctcgaccgcaacaagacggcg
ctgctgcccgatccgatcgcgatcagcagcgagcgcgacggcatcggcatcgacgtcgcg
ctcgagtggaacgacagctattacgaaaatgtcctctgcttcacgaacaacatcccgcag
cgcgacggcggcacgcacctcgcagccttccgcgccgcgctgacgcgtacgctcaacggc
tatggcgaaaagtcggggatgctgaagaaggaaaaggtcagcctgaccggcgaggatatg
cgcgaaggcctgaccgcgatcgtgtcggtcaagctgcccgatccgaagttttcgtcgcag
accaaggacaagctggtcagctccgaagtccgccagccgctcgaaagcctgatggccgac
cggatgaccgaatggctggaagaaaatccggcgcacgcgaaggcggtgatccagaaggtc
atcgacgccgccgcggcgcgcgaggcagcgaagaaggcgcgcgagctgacgcggcgcaag
ggcgcgatggatatcgcgagcctgcccggcaagctcgccgactgtcaggagcgcgatccc
agcaagtgcgaactcttcctggtcgagggtgactcggcaggcggatcggcgaagcagggc
cgcgaccgccatgtgcaggcgatcctgccgctgaagggcaagatcctgaacgtcgagcgc
gcgcgcttcgaccgcatcatctcgtcgaaggaagtcggcacgctgatccaggcactcggc
acgggcatccgcgacgagttcaacatcgagaagctgcgctatcacaagatcgtgatcatg
accgacgccgacgtcgacggcgcgcatatccgcacgcttctgctcaccttcttctatcgt
cagatgcccgagatcatcgagaacggccatctctacatcgcccagccgccgctctacaaa
gtcgcgaagggccggagcgaggtgtatctgaaggacgataccgcgctcgaaaactacctc
gtcgatggcgggatcgatgcgctgctgctcgaaaccccgggcggcgcgcggtcgggcaac
gacctgcgcgacctgatcgagcatggccggcgcctgcgcgcgctgatgcgctatgtgccg
cgcagcctgaaccacgggctcgtcgaggcgctcgcctttgccggggcgctcgaccccgac
ctcgacaccgcgggacgccatagcgctgccgcgacttcggcaacctggctcaatgccgcc
gagggcgcgctgaccggcggcggcgaagccgtctggactgtcgaggcggtcgaaggcggc
ggctatacgctcgagcgccgctggcgcggggtcagcgatctccacgcggtcgatgccgca
ttcctgcaaagccaggaagcgcgccgcctgcacaagctggcgagcgagcaggccgaaacc
tatgcgcgccccggccgcctcgtgaaggcgagcggcgccgcggcggtcgaggtcgagacg
gccgaaggcgaggaagaggatgtccccgcggcgaccaacgccaaggcgatcccggtaacg
cgcccgtccgaactgctcgacgcgatcttcgcgcacagccgcaagggcctcgcggtcagc
cgctacaaggggctgggcgaaatgaacgccgaacagctgtgggaaacgacgctcgatccg
tcgaaccgctcgctgctccgcgtccgcaccgagcaggccgacgtcgccgacggcatcttc
gaacagctgatgggcgacgaggtcgagccgcggcgcgacttcatccagaccaatgcgctg
agcgtcgccaacctcgacgtctga
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