Sphingopyxis sp. BSN-002: L7H23_13405
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Entry
L7H23_13405 CDS
T10439
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spbs Sphingopyxis sp. BSN-002
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spbs03400
]
L7H23_13405 (addB)
Enzymes [BR:
spbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L7H23_13405 (addB)
DNA repair and recombination proteins [BR:
spbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
L7H23_13405 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
UKK83555
LinkDB
All DBs
Position
2713696..2716665
Genome browser
AA seq
989 aa
AA seq
DB search
MADAKPRIFSIPVHRAFADALAAGIIAEFADGALGLAEGLILLPSNRARSAVQAAFVRAG
GTGLLMPRLAVIGDADLDESVALALDAIDDDPLPPAIDALRRRLLLAELIERHTPAGEAP
IAGAAAFQLADGLARVIDQLHYEEVRVGDLVDLDLGAFAGHWQASLGRLRLLVDHWPAVL
AKTGSIDRAERRNRLLDRVTEGWRAMPPARFVVAAGITTAAPAIARLLRTVADMERGMVV
LPGVDRLMATDEWGALGPTRPDPENPARPLETHPQYHLKLLLDRMGASRDEVVEWEATSE
FDGPAARTSFVSLLFAPADYTAQWQAAGDLSAAAAGISGTVFADDGQEAQGIALLMREAI
ETPGRTAALVTPDRGLAERVAAALARWGISVDDSAGQPLSRTPPGALLLLLAKLAAEFDP
VALVSLLGHPLVRKGEGRTAWLDQLRRLDLILREPGLLPGWDGVSARIAERVADPKARGH
GLALQLLPWWDEVSAALSAALAPFSGPTPPATLLAALQQAAEWLTGDAVWAGPAGRMLAE
LFDQWALARGDGPALVDPADFPDMLGQLLAQASVRPPYGGHPRLFIWGLLEARLQRADLM
ILGGLDEGRWPAATQPDPWLAPGIRRLLGLPAPERQQGMAAHDFASALAAREIVVTRAHR
SGGDPAVASRFWLRLAALAGDLPEPMPGGVALTRLAAELDLPAGGAQPVGRPAPRPPVDD
RPRRISVTAVDRLARDPFGYYANQMLGLSALDPLSAAPDPRWRGTRVHRLFEDWVRGGAT
RDGFEAELVALREDAALDAIARAFWLPRIEPALRWAAAQVWDREDRTPVDVEVRGEYVAD
GLTLHGKADRIDRDDQGRLSIVDYKSGGAPSAKAAFDKLDNQLGLLGLIAREGGMADVAA
APVEALEYWSLRPDRRAGGAGKISNTYGSRSDLKNAGQAIDHAADALAELAALYLFGDAP
FVPGEAAGYGEYDQLMRRDEWFGRGEEGT
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgaagccgcgcattttttcgatcccggtccaccgggccttcgccgacgcg
ctcgccgccggaattatcgcggagtttgcagacggcgctctggggctggccgaggggctg
atcctgttgccgagcaaccgcgcgcggagcgcggtgcaggcggcgttcgtgcgcgcgggc
gggacggggctgctgatgccgcggctcgcggtgatcggcgacgccgatctcgatgaaagc
gtcgcgctggcgctcgatgccatcgacgatgatccgctaccgcccgcgatcgatgcgttg
cggcggcgcctgctgcttgccgagctgatcgagcgccacacgccggcgggcgaagcgccg
attgcaggcgcggcggccttccagcttgccgacgggctcgcgcgggtgatcgatcagttg
cattatgaggaggtgcgcgtcggcgatctcgtcgacctcgacctcggggcgttcgccgga
cattggcaggcgtcgctcggacggctgcggctgctcgtcgatcattggccggcggtgctc
gcgaagaccgggagcatcgaccgcgccgaacggcgcaaccggctgctcgatcgtgtgacc
gaagggtggcgcgcgatgccgcccgcgcgctttgttgttgcggcgggtatcacgacggcc
gcgcccgcgatcgcgcggttgctgcgcacggtcgccgatatggagcgcgggatggtcgtg
ctgccgggcgtcgaccggctgatggcgaccgacgagtggggagcgctcggcccgacgcgg
cccgatcccgaaaatccggcgcggccgctggagacgcatccacaatatcatctgaagctg
ctgctcgaccggatgggcgcgagccgcgacgaagtggtcgagtgggaggcgacctcggaa
ttcgacggtcccgccgcgcgcacctccttcgtctcgctgctcttcgcgccggccgattat
accgcgcagtggcaggcggcgggcgacctgtcggcagcggccgcagggatttcggggacg
gtgttcgccgacgacgggcaggaggcgcaggggatcgcgctgctgatgcgcgaggcgatc
gagacgccggggcggaccgcggcgctggtgacgcccgaccgcgggctggccgagcgcgtc
gcggcggcgctcgcgcgctgggggatttcggtcgacgacagtgcggggcagcccttgtcg
cggacgccgccgggggcgttgctgttgttgctggctaagctcgcggcggagttcgatccg
gtcgcgctggtgtcgctgctggggcatccgctggtgcgcaagggcgaagggcggacggcg
tggctcgatcagctgcggcggctcgacctgattctgcgcgagccggggctgcttccggga
tgggacggggtgagcgcgcggattgccgaacgcgtcgccgatccgaaagcacgcgggcat
ggcttggcgttgcaattgctgccttggtgggacgaggtgtcggcggcactgagcgcggcg
ctggcacccttctccgggccgacgccgccagcgaccttgctggcggcgctgcagcaggcg
gccgaatggctcaccggcgacgcggtctgggcgggaccggcggggcggatgctcgccgaa
ctgttcgaccaatgggcgctggcgcgcggcgacgggccggcgctcgtcgatcccgccgac
tttcccgatatgctgggccagctgctcgcgcaggcgagcgtacggccgccctatgggggg
catccgcgcctgttcatctggggcttgctggaggcgcggttgcagcgcgccgacctgatg
atcctcggcgggctcgacgaggggcgctggcccgcggcgacgcagcccgatccatggctc
gcgccgggcatcaggcgcctgctcggcctgcccgcgcccgagcggcagcaggggatggcg
gcgcatgatttcgcgagcgcgctggcggcgcgcgagatcgtcgtcacacgcgcgcaccga
agcggcggcgatccggcggtggcgtcgcgcttctggttgcggctggcggcgctggcgggc
gatctgcccgagccgatgccggggggtgtcgcgctgacccggctcgcggccgaactcgat
ctgcctgcgggcggtgcgcagccggtgggcaggcccgcgccgcggccgccggtcgacgac
cgcccgcgcaggatcagcgtgaccgcggtcgatcggctcgcgcgcgatccctttggctat
tatgcgaaccagatgctcggtctgtcggcgctcgatccgctgagcgccgcgcccgatccg
cgctggcgcgggacgcgggtgcatcggctgttcgaggattgggtgcgcggcggcgcaacg
cgcgacgggttcgaggcagagctggtggcgttgcgcgaggatgccgcgctcgatgcgatc
gcgcgcgctttctggctgccgcggatcgagccggcgttgcgctgggcggcggcgcaggtc
tgggatcgcgaagatcgcacgcctgtcgatgtcgaggtgcggggcgaatatgtcgcggac
ggcctgacgctgcacggcaaggccgaccggatcgaccgcgacgatcaggggcggctgtcg
atcgtcgactataaatcgggcggtgcgccgagcgcgaaggcggcgtttgacaagctcgac
aaccagctcggcctgctcgggctgatcgcgcgcgagggcgggatggcggatgtcgctgcg
gcgccggtcgaggcgctcgaatattggagtctgcggcccgatcgccgcgcgggcggtgcg
gggaagatatcgaacacatatggctcgcgcagcgacctcaagaatgccgggcaggcgatc
gatcatgccgccgatgcgctggcggagctcgcggcgctctacctgttcggcgacgcgccc
ttcgtgccgggcgaagccgcgggctatggcgaatacgatcagctgatgcgccgcgacgaa
tggtttgggcgcggggaggagggcacatga
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