Sphingopyxis sp. BSN-002: L7H23_13905
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Entry
L7H23_13905 CDS
T10439
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L7H23_13905 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spbs03019
]
L7H23_13905 (pnp)
03016 Transfer RNA biogenesis [BR:
spbs03016
]
L7H23_13905 (pnp)
Enzymes [BR:
spbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
L7H23_13905 (pnp)
Messenger RNA biogenesis [BR:
spbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L7H23_13905 (pnp)
Transfer RNA biogenesis [BR:
spbs03016
]
Prokaryotic type
tRNA degradation factors
L7H23_13905 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
Motif
Other DBs
NCBI-ProteinID:
UKK83652
LinkDB
All DBs
Position
2813983..2816298
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AA seq
771 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLDLVVA
ATYDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIVKLAEQAAKDPWEVAAGDDNA
AIKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFAADGLSPQEVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
ESEQMVDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIEMMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLDQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDVLSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGPR
RDGGDRGDRGRGGRDRGPRRDGEGRGDRGPRRERSEDGPEDQGHVPDFLKD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgaccctcgaaacg
ggcaaggttgcccgccaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtc
ctgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggacttcttcccgctcacc
gtccattatcaggaaaaatattcggccgccggccgcatcccgggcggcttcttcaagcgc
gaacgcggcgcgaccgaaaaggaaacgctggtcagccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggcttctacaacgagatcaacgccatcgctcaggtgctgagctat
gacggccacaacgaacccgacatcctcgcgatggttgccgcttcggccgctctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggttacctgaacggcgaa
tatatcctgaacccgaccgacgaacaggttgccgaaggcgacctcgacctcgtcgtcgcc
gccacttacgatgcggtgatgatggtcgaatccgaagcgaacgagctgtcggaagaggtc
atgctcggcgccgtcctgttcgcgcacgacgcgtgcaaggaagtcgtcaaggcgatcgtc
aagctcgccgaacaggccgccaaggatccgtgggaagtcgccgccggcgacgacaatgcc
gcgatcaaggacaagctcaagaagctgatcggcaaggacattgccgccgcttacaagctg
accgacaagtcggcccgttcgaatgcgctcaacgaagcgcgcgcgaaggcgaaggaaagc
ttcgccgccgatggcctgtcgccgcaggaagtcatggccggcatcaagctgaccaagaag
ctggaagccgaaatcgttcgcggcgccatcctcaaggacggcaagcgcatcgacggccgc
acgacgacccagattcgtccgatcgtcgccgaaacgcacttcctgccccgcgcgcatggt
tcggcgctgttcacccgcggtgaaacgcagacgatcgccaccgcgacgctcggcaccaag
gaaagcgaacagatggtcgatggcctgaacggcctgtcgtaccagaacttcatgctccat
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgccccgggccgccgc
gaagtcggtcatggcaagctggcgtggcgcgcgctgcaccccgtgctgccgacgaaggac
gagttcccctatacgatccgcctcaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtctgcggcggttcgctcgcgatgatggacgccggtgtgccgatcaagcgc
cccgtctcgggcatcgcgatgggcctgatcctcgaaggcaaggattatgcgatcctgtcg
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtggccggtacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcttc
gaagccgctttgaaccaggccaaggaaggccgcgcgcacatcctcggtgaaatgaacaag
gcgctcggcgaaacccgcagcgagctgtcggcacacgcgccgcgcatcgagatgatgcag
atcgacaagtcgaagatccgcgacgtcatcggtaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcg
agcgatctcgaccagatcgaagccgcccgcaagtggatcagcggcatcgtcgaggaagct
gaagtcggcaagatctatgacggcaaggtcgtcaacctcgtcgatttcggtgcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcaagaacgagcgcgtc
gagaaggtctcggacgtcctgagcgaaggccaggaagtcaaggtcaaggtcctcgagatc
gaccagcgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaagag
ctggaagacacccgtccggcgcgcgaaccccgcgagccgcgcggcgatcgtggtccgcgc
cgtgacggcggcgaccgcggtgatcgtggccgtggcggccgcgaccgtggcccgcgccgt
gatggcgagggccgtggcgaccgtggcccgcgccgcgagcgcagcgaagacggtccggaa
gatcagggccatgtgcccgacttcctgaaggactaa
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