Sphingopyxis sp. BSN-002: L7H23_15055
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Entry
L7H23_15055 CDS
T10439
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L7H23_15055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spbs03400
]
L7H23_15055
Enzymes [BR:
spbs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
L7H23_15055
DNA repair and recombination proteins [BR:
spbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L7H23_15055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UKK83874
LinkDB
All DBs
Position
3026516..3027943
Genome browser
AA seq
475 aa
AA seq
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MKEVVLKTPGDFAEWRSAARGLLAGGVAPEDVSWRGSEEGASLFGDEIGSAPAGQLSLPR
ELVEIADRVICHRDAEVPGRLYRIVWRALHDRHLLARTTDPEVDWLRKADKAIRRDVHKM
HAFVRFRRLGEEDGRESFAAWFEPSHRILRLTAPFFQRRFYGMDWAIVTPDARAIWQDEM
LSYGPGGTKDEVPDSDVVEDQWRTYYGAIFNPARVKIEAMRAEMPKKYWRNLPEAQDIAP
LIAGAEARVERMREAAVSMANPLTGKWRTRVQDELTLGDEIETLADLAKAVDRCTRCPLH
CNATQAVAGEGPGAAKIMLVGEQPGDREDLEGKPFVGPAGQLLNEVLYDAGLERRRLFLT
NAVKHFKFEPRGKRRLHQNPTTAEIDVCRWWLDKERALVQPDIIVTLGASALRGVTGKSA
SIKSMRGAVHELEGGTKLIATIHPSFLLRLPDRERAAKERELFVADLALARKLAA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaggtcgttctcaagacgcccggcgattttgccgaatggcggagcgccgcgcgc
gggttgcttgcgggcggcgtcgcgcccgaggatgtgagttggcgcggaagcgaagagggc
gcgtcgttgttcggtgacgagattggctcagcgcccgcaggtcaactcagcttgccgcgc
gaactggtcgagattgccgaccgggtgatctgccaccgcgacgccgaagtgccggggcgg
ctctatcggatcgtgtggcgcgcgctccacgaccggcatctgcttgcgcggacgaccgac
ccggaagtcgactggctgcgcaaggccgacaaggcgatccgccgcgacgtgcacaagatg
cacgccttcgtgcgcttccgtcggctcggcgaggaggacgggcgcgagagctttgcggcg
tggttcgaaccgtcgcaccgcattctcaggctcaccgcgcccttcttccagcggcgtttc
tacgggatggactgggcgatcgtgacgccggatgcgcgcgcgatctggcaggacgaaatg
ctgagctacggccccggcgggacgaaggacgaggtgcccgacagcgacgtcgtcgaggat
cagtggcgaacctattatggcgcgatcttcaatcctgcacgggtgaagatcgaggcgatg
cgtgccgaaatgccgaagaaatactggcggaacctgcccgaggcacaggatattgcgccg
ttgattgcgggggccgaggcgcgggtggaacgcatgcgcgaagcggccgtttcgatggcg
aaccccttgaccggaaagtggcggacgcgcgtgcaggacgaactgacccttggcgacgag
atcgagacgctggccgatctggcgaaggcggtcgatcgctgcacgcgctgtccgctccac
tgcaacgcgacgcaggcggtcgcgggcgaggggccgggggcggcgaagatcatgctcgtc
ggcgagcagccgggcgaccgcgaggatctggaaggcaaaccctttgtcgggcccgccggg
cagttgctcaacgaagtgctgtatgatgcggggctcgagaggcggcggctgttcctcacc
aacgcggtcaagcatttcaagttcgagccgcgcggcaagcgccgcctccaccagaatccg
acgactgccgagatcgacgtgtgccgctggtggctcgacaaggagcgcgcgctggtgcag
cccgacatcatcgtcacgctgggcgcgagcgcgctgcgcggggtgacggggaagagcgcg
agcatcaagtcgatgcgcggcgcggtgcacgagctggaagggggcacgaagctgatcgcg
acgatccatccttcttttctgctgcgtctgcccgaccgtgagcgggccgcgaaggagcgc
gaactgttcgtcgccgacctcgcgctcgcgcggaaactcgccgcctga
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