Sphingopyxis sp. BSN-002: L7H23_15135
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Entry
L7H23_15135 CDS
T10439
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs03018
RNA degradation
Brite
Enzymes [BR:
spbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L7H23_15135
Messenger RNA biogenesis [BR:
spbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L7H23_15135
Ribosome biogenesis [BR:
spbs03009
]
Prokaryotic type
rRNA helicases
L7H23_15135
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GFIT
Other DBs
NCBI-ProteinID:
UKK83890
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Position
complement(3041812..3043680)
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AA seq
622 aa
AA seq
DB search
MPFENLSPVLSDALVARGYEALTPVQTHVTEDEAKGRDLLVSAQTGSGKTVAFGLAMADE
LIEDGRLPFASSPLALIVAPTRELALQVSRELSWLYGKAGARIATCVGGMDASRERRNLS
QGVHIVVGTPGRLRDHLERGALDLEALRVAVLDEADEMLDMGFREDLEEILDATPETRRT
LLFSATIPKPIAQLAKRYQRDALRISTVGEDRGHGDIAYQVVTVAPADIEGAVINLLRLH
EAETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNHALQALRDRRARVCVATD
VAARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVDGMLRG
AKIEAEWMNAPTAADVRQKDQERLIEKLLAPVEHEAEDLELAQRLMAERSAEDIAASLVR
AHRALMPPPEDLIDNGPPARRERGERGDRFERDDRPDRGQHREQFDDSVWFKLNIGRRQN
ADPRWILPLLCRRGHVTKHEIGAIRIGPSETLFNIPLAIADRFAEAIQRTANQDGEDDSG
VAITPAPGGATYPPRREKGPHKGGARHGGPRHDGPRHDGPRHDGPRGDGPRKPRGASTPG
GPTERYKPKPYGQRGPRKQGKY
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgaaaatctctcgcccgtcctttcggacgccctcgtcgcgcgcggctatgaa
gcgctcacccccgtccagacgcacgtcaccgaagacgaagccaagggccgcgacctcctc
gtctcggcgcagaccggttcgggcaagaccgtcgccttcggcctcgccatggccgacgag
ctgatcgaggacggccgtctgcccttcgccagctcgccgctcgcgctgatcgtcgcgccg
acgcgcgagctcgcgctgcaggtcagccgcgaactgagctggctgtacggcaaggccggc
gcgcgcatcgcgacctgcgtcggcggcatggacgcaagccgcgaacgccgcaacctcagc
cagggcgtccacatcgtcgtcggcaccccgggacgcctgcgcgaccatctcgaacgcggt
gcgctcgaccttgaggcactgcgcgtcgccgtcctcgacgaggccgacgaaatgctcgac
atgggctttcgcgaagatcttgaggaaatcctcgacgcgacgcccgagacgcgccgcact
ttgctgttctcggcgacgatcccgaagccgatcgcccagctcgcgaagcgctatcagcgc
gatgcgctgcgcatctcgaccgtcggcgaagaccgcggccatggcgacatcgcctatcag
gtcgtgaccgtcgccccggccgatatcgagggcgccgtcatcaacctgctccgcctgcac
gaggccgagaccgcgatgctgttctgcgcgacgcgcgacaatgtccgccgcctccacgcc
agcctcgtcgagcgcggtttcgccgccgtcgcgctgtcaggcgagcatagccagaacgag
cgcaaccatgcgctgcaggcgctccgcgaccgccgcgcgcgcgtctgcgtcgcgaccgac
gtcgccgcgcgcggcatcgacctgccgagcctcagcctcgtcgtccatgtcgaaatcccg
cgcgacgccgaaacgctccagcaccgctcgggccgtaccggccgcgcgggcaagaagggc
accgcggtcctgatcgtcccctatccgcgccgtcgccgcgtcgacggcatgctgcgcggc
gcgaagatcgaggcggagtggatgaacgccccgaccgcggccgacgtccggcaaaaggat
caggagcggctgatcgaaaagctgctcgcccccgtcgagcatgaggctgaagacctcgaa
ctcgcgcagcgcctgatggccgagcgctcggccgaggatatcgccgcatcgctcgtccgc
gcgcaccgcgcgctgatgccgccccccgaagatctgatcgacaatggcccgcccgcgcgc
cgcgagcgcggcgagcggggcgaccgcttcgaacgcgatgatcgtcccgaccgcggccag
caccgcgagcagttcgacgacagcgtctggttcaaactgaacatcggccgccgccagaac
gccgacccgcgctggatcctgcctttgctctgccgccgcggccatgtgaccaagcacgag
atcggcgcgatccgcatcgggccgagcgaaaccctgttcaacatcccgctcgccatcgcc
gaccgcttcgccgaggccatccagcgcaccgccaatcaggatggcgaggacgacagcggc
gtcgcgatcactcccgcgcccggcggcgccacctatccgccgcgccgcgagaaaggtccg
cacaagggcggcgcgcgtcacggcggtccgcgccatgacggcccccgccacgacggtccg
cgtcatgacggcccgcgcggcgatggcccgcgcaagccgcgcggcgccagcacgcccggc
ggcccgaccgaacgctacaagcccaagccctatggccagcggggcccgcgcaagcagggc
aaatattga
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