Sphingopyxis sp. BSN-002: L7H23_18105
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Entry
L7H23_18105 CDS
T10439
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spbs Sphingopyxis sp. BSN-002
Pathway
spbs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
L7H23_18105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spbs03019
]
L7H23_18105
03009 Ribosome biogenesis [BR:
spbs03009
]
L7H23_18105
04131 Membrane trafficking [BR:
spbs04131
]
L7H23_18105
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spbs04147
]
L7H23_18105
Messenger RNA biogenesis [BR:
spbs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
L7H23_18105
Ribosome biogenesis [BR:
spbs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
L7H23_18105
Membrane trafficking [BR:
spbs04131
]
SNARE
SNARE associated proteins
Others
L7H23_18105
Autophagy
Aggrephagy
Other aggrephagy associated proteins
L7H23_18105
Exosome [BR:
spbs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
L7H23_18105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_33
AAA_22
AAA_5
AAA_2
AAA_14
TIP49
IstB_IS21
AAA_lid_PRS2_C
Mg_chelatase
AAA_28
nSTAND3
AAA_7
AAA_18
Sigma54_activat
Vps4_C
NPHP3_N
AAA_3
RNA_helicase
AAA_24
Zeta_toxin
AAA_17
ABC_tran
AAA_30
AAA_11
DUF815
TsaE
AAA_25
AAA_19
Parvo_NS1
ATPase
NB-ARC
Viral_helicase1
bpMoxR
Sigma54_activ_2
Motif
Other DBs
NCBI-ProteinID:
UKK84459
LinkDB
All DBs
Position
3659962..3662286
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AA seq
774 aa
AA seq
DB search
MADAAVKEKQVKLQVANARAEESGGGIARIPRSAMAELGVTEGDVIQISGKRETASRVVA
PYAEDEGLEVIRLDGLQRANAGAGAGDMVSLSRVETRPATRVVFAPAQQNLRLQGSANAL
KRNFFGRPLVAGDTVATTGQQQLPSGEMPAQLRQMLNAPAYALTELRLLVVSATPKGVVF
IDENTEVELLPEYQEPQDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFQRLGVDP
PRGVLLHGPPGTGKTRLARAVANESDAQFFLINGPEIMGSAYGESEKRLRDVFEQATKAA
PSILFIDEIDSIAPKRGQVQGEAEKRIVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEAL
RRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGEDVDLDELARTTFGFVGADMAALTRE
AAIEAVRRIMPKLDLEEGTIPPEVLDELRVTREDFNNALKRVQPSAMREVMVQAPKTRWS
DIGGLDAARDKMIEGIELPLKHPEAFRRLGIRAAKGFLLYGPPGTGKTLLAKAAARESDA
NFIAIKSSDLLSKWYGESEQQIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVT
ERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGRLDELIYVSVPDKGGRQRIL
EIQTGKMPLAKDVDLAALADKTDRFTGADLEDLTRRAGLAALKRSIASDTVTMEDFETAL
KDTRASVTEAMEKDYEKIQGEIKQQAMSVNPIGFFAPGTLKPVREQKHPDEPAA
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
ttggccgacgcagcggtaaaagaaaaacaggtcaaactgcaggtggccaacgcccgcgcc
gaggaaagcggcggcggcattgcccgcattccgcgctcggcaatggccgaactcggcgtg
accgagggcgatgtgatccagatcagcggcaagcgcgagaccgcctcgcgcgtcgtcgcg
ccctacgccgaggacgaagggctcgaggtcatccgcctcgacggcctgcaacgcgccaat
gcaggcgcgggcgccggtgacatggtgtcccttagccgcgtcgagacgcgcccggcaacg
cgcgtcgttttcgcccccgcgcagcagaatttgcggcttcaaggttccgcgaacgcgttg
aagcgcaatttcttcggccgtccgctcgtcgcgggcgacaccgttgctacgacgggccag
cagcaattgccgtcgggcgaaatgcccgctcaactgcgccagatgctgaacgcgccggct
tatgcgcttaccgaactgcgtctgctcgtcgtgtcggccacgcccaagggcgtcgtcttc
atcgacgagaatacagaggtcgagctgctccccgaatatcaggagccgcaggacgcgcgt
cgtaccgacgtcacctatgacgatctcggcgggctcggcgaaaccatcgaccagttgcgt
gagatggtcgagctgccgctgcgctaccccgaactcttccagcgcctcggcgtcgatccg
ccgcgcggggtgctgctccatggcccgccgggaacgggcaagacgcgcctcgcacgcgct
gtggcgaacgaaagcgacgcgcaattcttcctgatcaacgggcccgagatcatgggcagc
gcctatggtgagtccgaaaagcggctgcgcgacgtgttcgaacaggcgaccaaggccgcg
ccctcgatcctgttcatcgacgagatcgattcgatcgcgccgaagcgcgggcaggtgcag
ggtgaagccgagaagcgtatcgtcgcgcagctcctgacgctgatggacgggctggagccg
cggaccaatctggtcgtgatcgctgcgaccaatcgtcccgatgcgatcgacgaggcgctg
cgccgtcccggccgcttcgaccgcgagatcgtgatcggtgttcccgacgaaaagggacgc
cgtgagatattgggcatccacacgcgcggtatgccgctcggcgaggatgtcgatctcgac
gagctcgcgcgaacgacgttcggctttgtcggcgccgacatggcggcattgacgcgagag
gcggcgatcgaggcggtgcggcggatcatgccgaagctcgaccttgaggaagggacgatt
ccgcccgaagtgctcgacgaactgcgcgtcacgcgcgaggacttcaacaatgcgctgaaa
cgcgtccagccttcggcaatgcgcgaggtaatggtgcaggcgccgaaaacgcgctggagc
gacatcggcgggctcgacgcggcgcgcgacaagatgatcgagggcatcgaactgcccctg
aagcatcccgaggcgttccgccggctcggtatccgtgcagcgaagggcttcctgctctat
gggccgccgggtaccggcaagaccttacttgcgaaggcggcggcgcgtgaatccgatgcg
aacttcatcgcgatcaaatcgtccgacctgctgtcgaaatggtacggtgagagcgagcag
cagattgcgcggctgttcgcgcgggcgagggcggtcgcgccgacgatcatcttcatcgac
gaactcgacagtctggtgcccgctcgcggcagcgggacgtcgggtgagccgcaggtgacc
gaacgcgtcgtcaacacgatcctcgccgagatggacgggatcgaggagatgcagtcggtc
gtcgtcattggtgcaacgaaccgcccgaacctgatcgacccggcgctgctgcgtccgggg
cggctcgacgagctgatttatgtttcggttcccgacaagggcgggcgtcagcgcattctc
gaaatccagaccggcaagatgccgctggcaaaggatgtcgatctggcggcgctggcggac
aagaccgatcgcttcaccggcgccgatctggaagatttgacccggcgcgccggtctggcg
gcgctcaagcgctcgatcgccagcgatacggtgacgatggaggatttcgaaaccgcgctg
aaggatacccgcgcctcggtgaccgaggcgatggaaaaggattatgaaaagatccagggc
gagatcaagcagcaggcgatgagcgtcaatccgatcggctttttcgctcccgggacgctg
aagcccgtccgcgaacaaaagcatccggacgaaccggccgcatga
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