Shewanella putrefaciens CN-32: Sputcn32_0469
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Entry
Sputcn32_0469 CDS
T00513
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputcn32_0469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spc03019
]
Sputcn32_0469
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_0469
Enzymes [BR:
spc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sputcn32_0469
Messenger RNA biogenesis [BR:
spc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sputcn32_0469
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sputcn32_0469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABP74201
UniProt:
A4Y2L8
LinkDB
All DBs
Position
501600..503423
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AA seq
607 aa
AA seq
DB search
MEKLVLDTHDDPLSQRLAQVFGYRDFRDGQREVIERICGGQDCLVIMPTGGGKSLCYQLP
ALMMNGITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLY
VSPERLLTADFIERMQSLQLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPYVPMMAL
TATADQATRQSICERLGIDPYRLLSSFDRPNIRYTVAEKLNAANQLRHFLLQQNGSSGII
YCSSRRRVDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRLGQRFGINHLIEVLRGSKGAPIVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDVTRGSSITLNPSARPVLKGEVALMLAEPRIQLTTTKRKASQSKAPLNYDRKLFARL
KLLRRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDDFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcgtactcgacacgcatgatgatccgctctcgcaacgcttagcacaggtg
tttggttaccgtgactttagggacggtcagcgggaggtgatagaacgtatctgcggcggg
caagattgtttagtgatcatgccaacgggcggcggtaagagtctgtgttatcagttaccc
gctttgatgatgaatggcatcactattgtcgtctccccattgatttctttgatgaaagat
caagtcgatagcttattgcaaaccggtgttgctgcggcttatctgaattcttctttgccg
cgagagcagagtgccgaagtattaaggcagctacgccacggtgagttaaaactactttat
gtgtcacctgagcgcctattaaccgctgattttattgagcgtatgcagtcgctgcagctg
gcgatgtttgccatcgacgaggcgcactgtattagtcagtggggccatgattttcgccct
gaatatgcagcactcggccagttaaaacaactcttcccctatgtgcctatgatggcgctg
actgcaacagcagatcaggcaacgcgccaaagtatttgtgagcgtttaggtattgatcct
taccgactattatcgagttttgataggccgaatattcgctatacagtggccgaaaaactc
aatgccgctaaccagttacgacattttctactacaacaaaatggtagcagtgggattatt
tattgcagcagtcgtcgccgtgtcgatgaagtggccgaccgtttatgtctgcaaggtttt
aatgccaaggcctatcatgcgggaatgacgcaggaagaccgcggtgcagtacaggacagt
ttccttaaagatcaaattgatatcgtcgttgcgaccgtggcgtttggtatggggatcaat
aagtcgaatgtgcgttttgtggtgcattacgatatcccgaaaagtatcgaagcctattat
caggaaacgggccgagcaggccgtgatgggctcgatgccgaagcttttatgttgttcgat
cccgccgatattggtcgggtcagacatttgattgaacagtctgaacctgggccgcagcag
caggtcgaattccacaaactcaataccatggcggcctttgctgaggcgcaaacctgccgc
cgccaagtgctgctgcattactttgatgaaagtgcattagaaccctgtggtaactgcgat
atttgcctcgatccgcctaagcgctataacggcaccgaagatgcgcaaaaggtgctgtcg
tgtatttatcgactaggacagcgatttggtatcaatcacttaattgaagtgttacgcggt
tcgaaaggcgcaccgatagtcgatcgagggcatgacaaactcacgacttgggggattggt
aaagataaaagccatgaatattggctgagtgtgatccgtcaactcattcatctgggatta
gcaagccaagatgtgactcgtggctcctctattaccttaaacccatcggcacgacctgtg
ctcaaaggggaggtggcgttaatgcttgctgaaccgcgtattcagttaacaaccacaaaa
cgtaaggcgagtcagtctaaagcaccgcttaattatgaccgtaagttatttgcgcggcta
aaattgttgcgaagaaccattgccgaacagcaggacgtgccgccatatttagtgtttaac
gatgcgacactcgcagaaatggcggccatgatgccaacgagtgcgggtgaaatgctcgct
gttaacggggttggcgagcgtaaactcagccgttttggtgacgatttccttgatgagatt
gcagcttatttagctggagagtga
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