Shewanella putrefaciens CN-32: Sputcn32_0749
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Entry
Sputcn32_0749 CDS
T00513
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputcn32_0749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spc03019
]
Sputcn32_0749
03016 Transfer RNA biogenesis [BR:
spc03016
]
Sputcn32_0749
Enzymes [BR:
spc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sputcn32_0749
Messenger RNA biogenesis [BR:
spc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sputcn32_0749
Transfer RNA biogenesis [BR:
spc03016
]
Prokaryotic type
tRNA degradation factors
Sputcn32_0749
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ABP74479
UniProt:
A4Y3E6
LinkDB
All DBs
Position
835532..837955
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AA seq
807 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALNIHEEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLISGIVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGLDRRGRREARIVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILVAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSPV
IEKKLRRIPDEVTEADKVGRVDLRHLPLVTIDGEDARDFDDAVYAEKKAGGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTVS
AKGKLSGYKFYPAVMYSHARFTYTQVAEMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETMETQFIFNEQRKIEKIVPRGRNQAHKIIEECMILANVSAAKFVKKHKGEV
LYRVHEAPSEQKLANFKEFLAERGLTMTGGLEPTPSDYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKERGEATEKWTQDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTSFGLF
VRLNELFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLIMLGDDSKGGKRKVSASRDKPMTARERVNREGAKQGKAGKTAASSAKVGTGKAKPKAK
AGAKAKKATVKDPAKKPKAAKRSTRKK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgtgagtatattatcgaatacttacgttctcaaaaatcacccatcactcgtgacagcatc
gccgcagcgttaaacattcacgaggaagagcaactagaagccttaaggcgtcgcctacgt
gcgatggaacgcgatggcgaactggtgttcacccgcggacaaagctatggcttaccagag
aagatggacttaatttccggcatcgttcttgggcatagggaaggctttggctttttcaag
cccgatgaaggcggtgatgacttatttatctccaaccgcgatatgttgatgtacttccac
ggtgataaagtactggcgcaaaaggcagggttagatcgtcgaggccgccgcgaagcccgt
attgtacgccttattcagcctcgcagtgctgcaattgtcggtcgctatcatgtcgatagc
ggtatggcatttgtgattgccgatgataaacgcattacccaagaaattttagtcgccaat
gaagaccgcaatggcgcccgtcaaggtgatgtggttgtggttgaattaacgcgtcgccca
ggccgttttgttaaggctgcgggtaaagtgaccgaagtgcttggtaagcaaatggcgccg
gggatggaaatcgaaatcgccctgcgtaactatgacttaccccatacttggtcacccgtg
atcgagaagaaactgcgccgtattcccgatgaagtgaccgaagccgataaagtaggccgt
gtggatttacgtcatctccccttagtgactattgacggggaagacgcccgcgattttgat
gatgcagtgtatgccgagaaaaaagcaggtggcggctggcgtttatgggtcgcaatcgcg
gatgtcagttactatgtacgcaccgattcggcattagatactgaagcgcgtgcccgtggt
aattcagtgtatttcccgtcgcaagttatccctatgttgccagagaaaatctctaacggc
ttatgttcgcttaatcctcacgtcgaccgtttatgtatggtcgctgagatgacggtatct
gcaaaaggtaagttatcgggttacaaattttatccggctgtgatgtattcccatgcccgt
ttcacttatacccaagtggcagagatgttagaaggcggcccgattgcaccagagcacgag
gccttattcccacatttgcagtgtttacaatcattgtatttagcgctcgatgagcagcga
gccgagcgcggcgcgattgcctttgagaccatggaaacgcagtttatttttaatgagcag
cgcaagattgaaaaaattgtgccacgtggccgcaatcaagcacataaaatcattgaagaa
tgtatgattttagccaacgtttcggcggctaagtttgtgaagaaacacaaaggcgaagtc
ttgtatcgtgtacatgaagcgccatcagagcaaaagctagcgaactttaaagagtttttg
gccgagcgtggcttgactatgactggcgggcttgagccaacgccgtcagattatcagaac
gtgatgctgcaaattgccgaccgtcccgatgctgaacttatccaagtgatgttgctgcgt
tctatgcgtcaagcaatttatacacctgataatgaaggccacttcggtttagccttagaa
gaatatgcgcattttacctcgcccattcgccgctatccggatttagtgttacatcgtgtg
atccgttatttactggcgaaggaaaggggcgaagccactgagaagtggacgcaggatggt
ggctaccactatcaactcgatgaactcgatcaattaggtgaagagtgttcgaccacagaa
cgtcgtgccgatgaagcaactcgagatgtcagcgattggctcaagtgcgagtttatgcaa
gatcacgtcggcgataccttcgaagctgtgattgcttcagtaaccagttttggtttgttt
gtgcgtttaaatgagctatttatcgatggcttagtgcatatctcaagcctaggtagcgat
tactaccagtttgatccaatgcgccaacgtcttatcggcgagcacacaggccaagtctat
caagtgggtgatcctgtgacagttaaggtcgctgcagtcaacttagatgacagacagatt
gatttgatcatgctgggtgatgatagcaaaggtggcaagcgtaaagtatcagctagccgt
gataaacctatgacagcccgtgagcgtgttaatcgtgaaggtgctaagcaaggtaaagct
ggcaaaaccgcggcatctagcgccaaagttggaacaggcaaagccaaacctaaggccaaa
gcgggtgctaaagccaaaaaagcaactgtaaaagatccggctaaaaagccaaaagccgcg
aagcggagcacgagaaagaaataa
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