Shewanella putrefaciens CN-32: Sputcn32_0887
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Entry
Sputcn32_0887 CDS
T00513
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
spc
Shewanella putrefaciens CN-32
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spc03009
]
Sputcn32_0887
Enzymes [BR:
spc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sputcn32_0887
Ribosome biogenesis [BR:
spc03009
]
Prokaryotic type
rRNA helicases
Sputcn32_0887
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABP74616
UniProt:
A4Y3T3
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All DBs
Position
complement(987648..988907)
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AA seq
419 aa
AA seq
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MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL
AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ
NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHLL
RQEDVKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL
ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI
ERYIEQPLKRRVIEELRPKNKEARTPGKKKAKVKAKEAAKKTSKKEAAKKASKIARKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccaccttgacccaagtttactcgagtcattaaaagccatgggg
catcattcgcccaccacaattcagcaagaaactatcccctatgcgctagaacaaagggat
attctggcacgcgccccgactggcacaggcaaaaccgcaagctttttactgcctgcacta
caacatttaatcgatttcccccgccgattttcgggccaagcacgcatattaattctcacc
cccacccgtgagttagcgagccaaattcatcgctatgcttgccacttagccacggaccaa
gggctagatatcgccatcattactggtggtgttccctacgcaccgcaggaagaagcgctg
gcagggaacgtagatattctggttgcgacgcctggccgcttgatggaatacctagataaa
ggcaaattcagcgctgaagaagttgacatactgatcatcgatgaagccgatcgtatgctc
gatatgggattttcatccgtcgtccaagccatcgcactcgaagcccaaggtcgtaaacaa
aatatgctgttctcggcgaccttagaaggcggcggtgtgcagcgttttgcccgcgaagtg
ttaaaagatccaatcgaaatcgatgttgatgcgccccgtagcgaaaaggcaaaaatccac
caatggatccatttagccgacgataaagagcataagtttgctctactctgccatttgctg
cgccaagaagatgtcaaacgcactattgtgtttgtaaaaacccgtgacatagtcactagc
ttagaaggccagttactcaaagccggcattccctgcgccttcatgcgtggcgatatggaa
caaaagaaacgtttccaagcattgagtcgctttactaaaggtgaagtcaacgtattgctc
gcaaccgatgttgccgcccgcggtatcgatatcgacgacattactcatgtgatcaacttt
gatatgcctcgctctgccgatacctatattcaccgaattggtcgaactggccgcgctggc
gccaaaggtactgcaatttcgcttgccgaagcccacgatatgcgtatcgtcggtaaaatc
gagcgttatattgagcaaccattaaaacgccgagtgattgaagagttacgtccaaagaat
aaagaagcgcgcacaccgggcaagaaaaaagccaaagtgaaagcgaaagaagcggcaaag
aaaacaagcaaaaaggaagcggccaagaaagcgagtaaaatcgcccgcaaaaagaaataa
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