Shewanella putrefaciens CN-32: Sputcn32_1254
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Entry
Sputcn32_1254 CDS
T00513
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputcn32_1254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spc03019
]
Sputcn32_1254
Enzymes [BR:
spc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sputcn32_1254
Messenger RNA biogenesis [BR:
spc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sputcn32_1254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABP74982
UniProt:
A4Y4U9
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All DBs
Position
1408419..1409864
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AA seq
481 aa
AA seq
DB search
MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVL
EKLAAEILVNDDNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQ
RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA
PVHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLSEL
VGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVL
VATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDEMLAE
IEALIEQKLPVSVQSGYEEGTPLPARYRDIPASPTKPAKWSYKAPKDRAIGKSSESQARS
RQNIGRDAMRESPTREGKYAKDKAHGAEGKGSAGKPFNTTKPKPHSGSRSGFGVSRDKKN
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaacactcggtctatcttctcctattttgaatgcgataactgagtgtggc
tatcagcaactcactcaagtacaagagaaagtgatcccactagcctttgaaggcaaagat
attatggcctgcgcccaaacgggtacggggaagacggcagcctttgctctgcccgtactt
gaaaagttggcggctgagattttagttaatgatgacaacgacaaaccgattttacgcgcc
ttggtgatgacccccacccgcgaactggctattcaagtttgtgacaatatccagaaatac
agccaattcctgccactgaaaacaatcgcagtttacggcggcgccaatatgaatccccag
cgtaaaggggtggagcagggcgttgatatcctcgtggcgacaccgggtcgactcttcgac
attatcggccaattccagttagatttgtcgagtgtgacaaccttagtgatcgatgaagcc
gatcgcatgttagatatgggatttgtacgcgatattgaaaaagtgaaacgcttaatcgcg
cccgtgcaccaaaccatgctgttctcggccacatacagtgatgcagtcaaacagcttgca
caaaagatgctaaatgagcctcagtgggtgaatgttgccgacacgacgaccgcatctacc
gttgttcaagaagtgtatcgggttgataagcgccgtaaagccgagttgttgtcagaactc
gttggccgtaacaattggcgccaagtcctcgtgtttgcaagcactaaggaaagcgccgag
catttattacaagaattaaagcttgatggcatagccgctggtgtattccacggtgataaa
acccaaggcgcccgtaatagggtattggaagactttaagctaggtaagttgcgtgtattg
gttgcgaccgatgttgccgcccgcggcttagatattcaagcactacctttggttatcaac
ttagagttgccattttttgccgaagattatatccaccgcattggccgaacagggcgtgcg
ggattagcggggcgtgcgatttcgtttgtttcgccctctgatgatgagatgctggctgaa
attgaagctttaattgagcagaaactgccagtgtcagtgcagtccggttatgaggaaggt
acaccgctgcccgctcgttatcgtgatattcccgcatcgccgaccaaacccgctaaatgg
agttataaagcgccaaaggatcgtgctatcggtaaatccagcgaaagccaagctcgttct
cgtcagaacatcggacgcgatgcgatgcgagaaagcccgactcgtgagggaaagtatgcg
aaagataaggcgcatggtgcagaaggaaaaggatctgcgggcaaaccttttaatacgact
aaaccaaaaccacactcagggagtcgttctgggtttggcgtatctcgcgataagaaaaac
ggctag
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