Shewanella putrefaciens CN-32: Sputcn32_1363
Help
Entry
Sputcn32_1363 CDS
T00513
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03030
DNA replication
spc03430
Mismatch repair
spc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sputcn32_1363
03430 Mismatch repair
Sputcn32_1363
03440 Homologous recombination
Sputcn32_1363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spc03032
]
Sputcn32_1363
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_1363
Enzymes [BR:
spc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sputcn32_1363
DNA replication proteins [BR:
spc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sputcn32_1363
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sputcn32_1363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABP75091
UniProt:
A4Y558
LinkDB
All DBs
Position
1544202..1547675
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGA
GIKPIIGADFWMQVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEW
LLTYNEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLELIRTGRPDEER
YLHMAVVLAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDFLVDCSKKGL
EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGPHRASMMAT
LPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDIGEARSHFAK
ALEVDLDAEKLTPAVLDSIEQAMSPWRSGAVPVLINYSQTQAKGQFRLAESWRVNPSDEL
VFALESLLGPNKVRIVF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttttctatgtccgatggc
gtagccaaagttaaacctattcttgcccaagttgaggcgttaggtatggctgcggtcgcc
ttgacggatcaaaacaacttctgtggattagtaaagttttacagtggctgccatggtgcg
gggattaagcccattattggtgccgatttttggatgcaagtgcctgggtttgaaggtgaa
ttctgtgcgttaaccattatcgcaatgaacaacgtgggttatcaaaatctcactcaaatt
atcagccaagcctatttgcgggggcaggtggcgggtcgagtggtgatcgatcaagagtgg
ttactgacctataacgaaggcatattattgctttctggcgctaaggaaggtgatattggt
aaggcgttacttaaggggaataatactcaagttgaatccctttgtgagttttatcaaacc
catttcgctgaacgctactttttagagctaatccgcacgggtcgacccgatgaagagcgt
tatttgcatatggccgttgtgttggcgcaggaaaaaggcttcccggttgtggccaccaat
caggtcgtgtttttaaaacccgaagatttcgacgcccacgaaattcgcgtggctatccat
gatggctttactcttgcggatccccgccgtcctaaaaagtacagtgagcagcaatactta
cgtagtgaagaggaaatgtgcgagctatttgctgacattcctgccgcactttctaatacg
gttgaaatcgctaaacgctgtaatgtgacaattcgtttatacgagtattttctgcctaac
ttccctacgggcgatatgtccatcgaagactttttggtggattgttcgaagaagggtctc
gaggagcgcctcgcgtttttatttcccgatccacaggttcgtgccgagcgccgcggcgaa
tacgatgagcgcctagatatcgaattgcaagtgatcaaccaaatgggtttccccggttac
ttcttgatcgtgatggagtttatccaatggggtaaggataatgggattcctgtagggccg
ggccgtgggtcgggtgcgggttcgcttgttgcctatgctcttaaaattactgacttagat
ccgcttgaatttgacttgctgttcgaacgattcctcaaccccgagcgggtttctatgccc
gactttgacgtcgacttctgtatggatagacgggacgaggtgatagaccatgtggccgag
ttatacggccgtgaagcggtgtcgcaaatcatcaccttcggtactatggccgcaaaagcg
gttattcgcgacgttggccgcgtactaggtcatccctatggttttgttgaccgtatttca
aaacttattccccctgagcctggaatgacactggctaaagcctttgaggtcgaacctgcg
ctgcaggagtcctacgacgccgatgaagatgttaaagatcttatcgacatgtgtcgtaaa
cttgagggcgtgactcgtaacgcaggtaagcatgcgggtggggtggtaattgcacccact
aaaattaccgattttgcaccactttattgtgatgcagagggtaaaaacccagtaacacaa
ttcgataaaaacgatgtggaaaccgcaggccttgtgaagtttgacttcttggggctacgt
accctcacgattgtcgattgggcgctggagatgatcaacaaagtggaggtcaaaaatggc
cgccctcctgtacgtatcgaggcaattcctttagacgatcctgcctcgtttcgattatta
cagcgttatgaaaccaccgctgtttttcagcttgaatcccgcggtatgaaggatttgatt
aagcgacttcaaccggattgcttcgaggatatgatcgcgcttgtcgccctgttccgtcct
gggcctttgcaatcgggcatggtggataactttatcgagcgtaagcatggccgcgaggaa
gtgtcttacccagattcccaataccagcacgaatccttaaaggaattactctcacctacc
tatggcattatcttgtatcaagagcaggtcatgcagatagcgcaggtgctttctggctac
actctaggcggcgccgatatgcttcgccgtgccatgggtaagaaaaaacctgaagagatg
gctaaacagcgtagcatctttaaagagggtgcgattaaaaatggcgtcgacggtgagttg
tcgatgaaaatcttcgacttagtggaaaagttcgccggttatggttttaacaaatcccac
tccgccgcttatgccttggtttcctatcaaaccttgtggttgaaaacccattacccttca
cagtttatggcggcggtgatgtccgcggatatggataacaccgacaagatagtgacactg
gttgatgagtgcgaacgcatggggctcactctgatcccgcccgatgtgaacaaagggcta
tttaaatttactgtcgatgatgatctgcgaattgtttatggtatcggtgccattaaaggt
gtgggtgagggccctgttgagtcgattttagaggcgcgtaaagatggcccctttgttgat
ttattcgatttctgtgcccgtatcgacctgaaaaaactcaataaacgtgtgattgaaaag
cttatctgcgcgggtgccttagattccctcggaccgcatcgcgcttcgatgatggcgacc
ttacccgaagcgatgcgcgccgccgatcaacatgccaaagcgcaggcaatcggtcagcac
gatatgtttggcctgctcaatagcgagccggaagatagcaaacaacagtttgtggaatgt
accccatggccagataaaatttggcttgagggagagcgtgaaactttagggttatattta
acaggtcaccctattaatcaatatcttaaagaacttaagtactatacttcagggcgctta
aaagatgtgcatcctactgaacgtggtaaaacggtaaaggccgcaggtttagttgtcgcg
actagggtgatgctgaccaaacgcggttcaaagatgggattgttgacactcgatgacaag
agtgcgcgcctcgaggtgatgttatttaccgaagcctttgagaaatttaatcacttgctc
gagaaagataggatccttatctgcgaaggtgaagtaagttttgatgattttgctggtggt
aatcggatgactgctcgcaatattattgatattggtgaggcgcgtagccattttgctaag
gcgcttgaagtcgaccttgatgccgagaagttaactcctgcggttttagacagtattgaa
caagccatgagcccttggcgaagtggtgctgtgccagtactcattaattacagtcaaact
caggctaaaggacaatttagacttgctgagagttggcgagttaacccttctgatgaatta
gtcttcgcccttgaaagtttacttggcccaaataaagttaggatcgtgttttga
DBGET
integrated database retrieval system
