Shewanella putrefaciens CN-32: Sputcn32_1762
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Entry
Sputcn32_1762 CDS
T00513
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spc
Shewanella putrefaciens CN-32
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spc03016
]
Sputcn32_1762
Enzymes [BR:
spc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sputcn32_1762
Transfer RNA biogenesis [BR:
spc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sputcn32_1762
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABP75487
UniProt:
A4Y6A4
LinkDB
All DBs
Position
2008916..2010019
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AA seq
367 aa
AA seq
DB search
MFHYVSDEVSLNALVAQYQQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVALP
DLAKFWALLANPNIIKLVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLCGMGHGVGYAKL
VETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYE
EGVRMTEGRLDTPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEKALARDLALGFVIKD
HGLIALAKKQPKSMTELLKLNDLTEQEKRIHGKEILRVMQTVDLVNLPELVDVLALKPGY
KSAFKLIKNCLTELCEKYEVPLEMLGSKRHIHEYLQWRWDAEQGDLPIILTGWRGEIAAQ
SLAKLDV
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
gtgttccactatgtgagtgatgaagtgagccttaacgccctcgttgctcaatatcagcaa
agtaaaatactcgtgttagataccgagtttgttcgtacccgtacttattatgcaaagtta
ggtttgatccaagcttatgatggaaaaaccttggcgttgattgatcctgtcgcgctaccc
gatctcgccaaattctgggctttgttggcgaatcccaatattattaaattagtgcattct
tgtagtgaagacctagaagtattcgcgcactatggtcagtgtcaacctgtacctttattc
gatagccaaattgcggcatctttatgtggtatggggcatggtgttggttatgcaaagtta
gttgaaacctgtcttggcgaagtgattgataaaggtgagtcacgcaccgattggatccgc
aggccattaaccgaagcgcaacttgcctatgccgcaaatgatgtgttgtatctgcatcaa
ctttaccctcagcttgaagctaaattggtcgctcaggggcgcctaaattggttatatgag
gaaggggtgaggatgacggaagggcggctagatacgccagatctcgataccgcttactta
aaagttaaaaatgcctttcagttgactgaaattcaattggcttacctgaaagtacttgcc
aaatggcgtcttgaaaaagccttagcacgtgatttagctttgggatttgtgattaaagat
catggactgattgcattagctaaaaaacagcctaaaagtatgaccgagttgcttaagcta
aacgacctaaccgagcaggaaaagcgtattcacggtaaagagattttgcgagtaatgcaa
accgtggatttggtcaatctaccagagcttgtcgatgtgcttgcacttaagccgggctat
aaatctgcttttaagctgatcaaaaactgtttgactgaactgtgtgaaaagtatgaagtt
ccactggaaatgctaggttctaagcgacatatccatgagtatttacaatggagatgggac
gcagagcagggcgatttaccgataatcttaactgggtggcgtggcgaaatcgccgcacaa
tccctcgcaaagcttgacgtttag
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