Shewanella putrefaciens CN-32: Sputcn32_2250
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Entry
Sputcn32_2250 CDS
T00513
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spc
Shewanella putrefaciens CN-32
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spc03032
]
Sputcn32_2250
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_2250
Enzymes [BR:
spc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sputcn32_2250
DNA replication proteins [BR:
spc03032
]
Prokaryotic type
DNA Topoisomerases
Sputcn32_2250
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sputcn32_2250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
DUF4355
Motif
Other DBs
NCBI-ProteinID:
ABP75971
UniProt:
A4Y7N8
LinkDB
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Position
complement(2590448..2593090)
Genome browser
AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSTSEGNEKVKSAAEVKKMSP
EEKAQYKKVKDQQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIYLATDL
DREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQDAFSKPSTLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLTTPAEE
SLRMEVVKHLDSAFEPINEQQALAAVQALSSASFNVISREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALESVRDMIGKAFGAKYLPAEP
IRYGSKEGAQEAHEAIRPSNVHVEATDLTDMERDAQRLYELIWRQFVSCQMTPAQYDATK
LTVKAGDYELKATGRTLRFDGWTRVQTVLKKKNEEDNTLPFVSQGDVLALKELQPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSERLV
SSFADLMSYDFTASMEQTLDDVARGELDWKKVLDGFYADFTKQLEKAERDPEEGGMRLNQ
MVMTDIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGVEAISENSEDAE
TDALRAKHRCGICGTAMDSYLIDEKRKLHVCGNNPICEGYEVEEGQFKIKGYEGPLIECD
RCGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSDAHFVL
RDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPICDDEGNKAAVKFS
RKTKEQYVATEVDGKATGWSAHYINGKWVSESTAKKSKKA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcgccggccaaagctaagactattaataaatat
cttggcaaagaattcatcgttaaatcgagcgtaggtcacatccgtgatctgccgacatca
tcgacttcagaaggcaatgaaaaggttaaatccgctgccgaagttaagaagatgtcgcca
gaagaaaaagctcaatataaaaaggtgaaggatcagcaagcgctggtgtctcgcatgggc
gttaaccctgaaaagggctgggcggctaagtaccaaattttgccaggtaaagaaaaggtc
gttaaagagttacaggcacttgccgattctgctgaccaaatctatctcgcaaccgactta
gaccgtgagggagaagctatcgcctggcatttgcaagaggtgattggtggtgatccttca
cggtatcaacgtgttgtttttaacgaaattactaagtctgcgattcaagatgcttttagc
aaaccgtcgacactcgacactaacatggttaatgcccaacaagcccgccgctttttagac
cgtgtggtgggctttatggtgtcaccactcttatggaaaaaggtggcgcgaggcttgtca
gcgggtcgagtccaatccgtcgcagttcgcttagtggttgagcgagaaagtgaaatcaaa
gcctttgtgccagaagaattttgggatgtacatgcccagttaactacacccgcagaagaa
tcgctgcggatggaagtggttaagcatttagattcagcttttgaacccatcaatgagcaa
caagcattagctgccgtgcaggctttatcttcagcgagctttaacgtcatttcccgcgaa
gataaagcgacacaaagtaaaccttcagccccttttatcacctcaactttgcagcaggct
gcgagtacccgtttagggtttggtgttaagaaaaccatgatgatggctcagcgactttat
gaagcaggccatatcacttatatgcgtactgactcaaccaatttgagccaagaagcactc
gaaagtgtgcgtgatatgattggtaaagcatttggtgccaaatatctacctgcagaacct
attcgttatggttcaaaggaaggggcacaagaggctcatgaggcgattcgtccatcaaat
gtccacgtagaggccacagatctaaccgatatggagcgtgacgctcagcgtttgtatgag
cttatttggcgtcagtttgtttcttgtcagatgacaccagcacaatatgatgcaaccaaa
ttaacggtgaaagcgggcgattacgaattaaaagccacgggacgaacgctgcgttttgat
ggttggacacgggtacaaaccgtgctcaagaagaaaaatgaagaagataatacattgcca
ttcgtgtcacagggcgatgtattagcgttgaaagagttacagcctaaacaacattttact
aagccgccagcacgatacagtgaagcttctttagttaaagaattagaaaaacgtggcatt
ggccgcccatcaacctatgcaaccatcatttcaacgattcaagatcgtggttatgtaaaa
gtcgagaatcgtcgtttctatgccgaaaaaatgggtgaaattgtcagtgaacgattagtc
agtagttttgctgatttaatgagttatgactttaccgccagcatggagcaaacattagat
gatgtggctcgcggcgaattagattggaaaaaagtgcttgatggtttctatgctgacttt
actaagcaattagaaaaagcggagcgtgatcctgaagaaggtggcatgcgtcttaaccaa
atggtgatgacggatatcaagtgcccaacttgtggtcgtcctatggggatccgtactggt
acaactggtgttttccttggttgttctggttatgagttgccccccaaagaacgctgtaag
acgacgatgaacttaacgcctggtgttgaggcgattagcgaaaatagtgaagatgctgaa
acagatgcattgcgtgcgaagcaccgctgtggtatttgcggcacggcaatggacagttac
ctgatcgatgagaagcgtaagttacacgtttgcggtaacaatccgatttgtgaaggttat
gaggttgaagaaggccaatttaagatcaaaggttatgaaggcccattgattgagtgtgat
cgctgtggccatgatatggaattaaagaatggccgttttggtaaatattttggctgtact
aacgaagaatgtaaaaatactcgtaagttactgaaaaatggtgaggcagcgccgccaaaa
gaagatcccatttacttaccagagctcaaatgcagcaaatctgacgcgcattttgtctta
cgtgatggtgccgcaggtatcttcttagcggccagtactttccctaaatcacgggaaacg
agagcgccattagtggaagaattggtgaaataccgtgaattgctgtggcctaagtaccag
taccttgcagatgcgccaatctgtgatgacgagggcaataaggctgctgtcaaatttagc
cgtaaaacaaaagagcaatacgttgctactgaagttgacggtaaagcgacaggctggtct
gcgcattacatcaatggtaagtgggtgagtgagtcaacggctaaaaaaagtaaaaaagcg
taa
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