Shewanella putrefaciens CN-32: Sputcn32_2888
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Entry
Sputcn32_2888 CDS
T00513
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputcn32_2888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spc03019
]
Sputcn32_2888
Messenger RNA biogenesis [BR:
spc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sputcn32_2888
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
RMMBL
Motif
Other DBs
NCBI-ProteinID:
ABP76605
UniProt:
A4Y9H2
LinkDB
All DBs
Position
complement(3347632..3348921)
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AA seq
429 aa
AA seq
DB search
MPQISVTILRGADTIGGSCVKINHGEDSIVLDYGAPLMDSTGVSIDADLASSPSMENGIL
LDIQQQDTRPPLAYLLSHAHPDHYGLLRSLPKSSNIYLSDSSYSMMTIGNLFYPEALRFS
SLEQCRQFTPGKPFQVGPFTVTAFLMDHSAFGACSLLIEVDGKQVYYTGDFRGHGRKSQV
SDYIYANVKQPDLMLLEGTTLNGGHSLQFPTEVSVEDAMVSALNEGDGPAFVSASGSNID
RIVSLYNATKRTGKELVIDLYQLYLLEALKKYSPSLPPHKNDHLKVIFPQFQLAIIKSEF
GDDFLRYSNRHVNLSKLKGTNYVFRLSPYAMTPYLDSFKEKGVKPKLIYSMWLGYQSKQP
KFAEIANKYQESWQYIHTSGHAYLEHLQSFAGNISPKVLVPIHTLNRDKFSSYFDNVRIV
ENGESIVCE
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgccacagatctcagtaactatattgcgtggagcagataccattggtggtagttgcgta
aaaataaaccatggcgaagatagcattgtgttagattacggtgctcctctcatggatagc
acaggagtatcgattgatgcagacttggcttcaagcccatcgatggaaaatggtattttg
cttgatattcaacagcaagatactagacctcctttggcttatctcttatcccatgcacat
ccagaccattatggtctactgagatcattacctaaaagctcaaatatatacctgtcagat
agtagttactctatgatgactattggcaacttgttttaccctgaagcattgcgatttagt
tcactggagcagtgtcgacagttcactcctggaaaaccatttcaagttggtccattcaca
gtaacggcatttttaatggatcattcagcctttggcgcatgtagtcttttaatagaggtt
gatggtaagcaggtatattacactggggattttcgtgggcatggcagaaagtcacaggtt
agcgattacatctacgcaaatgtgaagcagcctgatttaatgctgcttgagggaacgacc
cttaatggagggcactcgctacaatttcctactgaagtttcggttgaagatgctatggtt
tcggcccttaatgagggtgatgggccagcttttgtttcagcctcaggtagcaatattgat
cgaattgtaagcctctataacgcaactaaacgcacaggaaaagagctagttatcgatcta
taccaactttacttgcttgaggcgctaaagaagtactcccctagcttaccaccacataaa
aatgatcacctaaaagtgatatttcctcaattccaactagctatcattaagtctgaattt
ggtgatgatttcctgcgatacagcaaccgccatgtgaatcttagtaagctgaaggggact
aactacgtattcagattatctccctatgcaatgaccccctaccttgactcatttaaagaa
aaaggggtaaaacctaaacttatctactctatgtggttaggttatcaaagtaagcagcct
aagtttgcagagatagccaataaatatcaggagtcatggcaatacattcatacgagtggt
catgcttacctagagcacttacagagcttcgcaggtaatatatcacccaaggttttagta
ccaattcatactctcaaccgtgacaagttttcaagctattttgataacgttcgcatagta
gaaaatggagagtcgatagtctgtgaatga
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