Shewanella putrefaciens CN-32: Sputcn32_3432
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Entry
Sputcn32_3432 CDS
T00513
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sputcn32_3432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spc03019
]
Sputcn32_3432
Enzymes [BR:
spc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sputcn32_3432
Messenger RNA biogenesis [BR:
spc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sputcn32_3432
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ABP77142
UniProt:
A4YB09
LinkDB
All DBs
Position
complement(4002426..4003745)
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AA seq
439 aa
AA seq
DB search
MSETHLSTQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQ
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFA
CEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKIPRKHPAGTRNLRERAGAGRPQ
GAHRSGGRPPRHDRTRRHS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatctacccaaaaatttgccgaccttcctctacatccagaggta
aaacaggctcttgcagagaacggttttgaattttgtacgccgatccaggcgttatcatta
cccgtattacttcaatcaaaagatatcgctggtcaggctcaaacgggcactggcaagacg
atggcttttttggttgctacatttaatcatttattatcgacgccaataccagaaggccgt
cagataaatcaaccccgtgccattatcatggcacccacccgtgaattggctattcaaatt
gctaaagatgcgattttattggctaaacatactcgcttaaaagtgggaattgtttacggt
ggtgaaagttatgatgttcagcgtaaagtattagatcaaggtgttgatatcttgattggt
actactgggcgcatcatcgattatgtgcgtcagggcattatcagcttaacggctattcaa
gctgtcgtattagatgaagcggatcgcatgttcgatttgggctttatcaaggatatccgt
ttcctatttaggcgtatgcctgatgccaatcaacggctcaatatgctgttctcggcaacc
ctctcgatgaaggtgcaagaactggcctatgatcatatgaatgatccggtcaaagtggat
attgcgcccgacgaaaaaacctctaagaacattaaagaagaagttttttatccttcccaa
gaagataaaatgcgcttgttgctgaccttaattgaagaagattggcctgaaaaagccatt
gtattttcaaacactaagcatagctgcgaaaatttatggtcttggctcgaaggagatggt
catcgcgttggattgttaacaggtgatgttcctcagaaaaagcgtattcgcattctggag
caatttactagtggccaattggatatcctagtcgcgacagacgttgctgcgcgtggctta
catatttctgatgtatcccatgtttacaactatgacttacctgacgattgtgaagactat
gtacaccgaattggtcgaacaggacgcgcgggtaataaaggggtttccatcagctttgcc
tgtgaagaatatgcgctgaacttgccggcaatcgaaagttatatcaatcactccatccct
gtgagtaattatgatagttcggcattgttagaggatattcctgcgccagttaagatcccg
cgtaaacatcctgcgggtacgcgtaacctacgcgagcgtgcaggagctggtcgcccgcaa
ggcgcccatcgtagtggtggacgtccacctcgccatgacaggacacgtagacactcgtaa
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