Shewanella putrefaciens CN-32: Sputcn32_3886
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Entry
Sputcn32_3886 CDS
T00513
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sputcn32_3886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_3886
Enzymes [BR:
spc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Sputcn32_3886
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Sputcn32_3886
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Sputcn32_3886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF1631
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
ABP77592
UniProt:
A4YCA9
LinkDB
All DBs
Position
4510500..4511315
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGIAPFLIEQTVSDLVIRNGSLRWPVPDIAKHIIGQTIRQVRRRAKYLL
IDTDAGTTIVHLGMSGSLRILPHNTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCELP
EEAHPLLAKLGPEPLTNAFNVNQLATALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDNERLSLLVAEVKQILAHAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTNCGNLLSEIRLGQRTTVFCSICQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagttgaagtcacccgtcagggtattgccccctttcttattgag
caaactgtctcggatcttgtgatacgtaatggctcactacgttggccagtacctgatatc
gctaaacacattattggccaaaccatacgccaagtgcgccgacgtgctaaatatctgtta
atcgatacagatgcaggcacgactatcgtccatttaggtatgtcgggaagtttgcggatc
ttgccgcacaacactcccgttgaaaaacatgaccatatcgacttagtgctcgccaatggg
cgtatattacgctttaacgaccctagacgttttggtgcttggctttggtgcgaactccct
gaagaagcccatccattactcgccaaacttgggccagaacctttaaccaatgcctttaat
gttaatcaattagccaccgcattagcgggaaaaaagaaggcaattaaactctgtttaatg
gataaccatattgtcgtcggtgtggggaatatttacgctaacgaggcgctatttgcagca
ggtattcacccagaagccgaagcgggaaaaatcgataatgaacgcttaagcctattagtt
gctgaggtgaagcaaatcttagctcacgcgataaagcagggaggaaccacactgaaagac
ttcaccaatgctgagggtaaaccgggatattttgctcaaaaactccatgtttatggtcga
ggcggcgaaacctgcacaaactgtggaaacctactcagtgaaatccgtttaggccaacgt
accaccgttttttgtagtatttgccaaactcgttga
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