Shewanella putrefaciens CN-32: Sputcn32_3906
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Entry
Sputcn32_3906 CDS
T00513
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03030
DNA replication
spc03410
Base excision repair
spc03420
Nucleotide excision repair
spc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sputcn32_3906
03410 Base excision repair
Sputcn32_3906
03420 Nucleotide excision repair
Sputcn32_3906
03440 Homologous recombination
Sputcn32_3906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spc03032
]
Sputcn32_3906
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_3906
Enzymes [BR:
spc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sputcn32_3906
DNA replication proteins [BR:
spc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sputcn32_3906
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Sputcn32_3906
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sputcn32_3906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABP77612
UniProt:
A4YCC9
LinkDB
All DBs
Position
4531281..4534049
Genome browser
AA seq
922 aa
AA seq
DB search
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGT
IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKIIENA
DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV
VADAAKVKTQESSMPNPALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAE
LVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISV
LANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLAIKYLGHKNIGFEDIAGKGAKQLTFN
QIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLI
DSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAF
AEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAP
MQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAK
AAILDVALLAEAGIGDNWDEAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccattgcaaacaacccacttgtccttgtggatggatcttcttatttataccgc
gcctattatgcgcctcctcacctgacaaactcaaagggcgaagcaacgggtgccgtctat
ggcgtagtaaatatgttacgcagtctattgagccgttaccaaccgagccatatcgccgtc
gtattcgatgccaaaggtaaaaccttccgtaatgatatgtacagcgaatacaaagcacag
cgcccaccgatgccggatgatcttcgttcacaaatcgaacctctgcataggattattcac
gcccttggtttaccccttatctctatccctggcgttgaagcggatgatgttatcggcaca
attgcccgccaagcaagccgtgagaatcgcgccgtactcattagtactggtgataaagat
atggcccaattggttgatgaaaatatcacgctgatcaataccatgacagataccatcatg
gggcccgatgaagttgcagcaaaatatggtgtaggtccagatcgtattattgatttctta
gccttgatgggcgataaggccgataatattccaggcttacctggtgtcggcgaaaaaacg
gcattagctatgctgactggcgcaggaagcgtggccaacctactcgcagctcccgaaaag
gtctctgacttaggcttcaggggcgcaaaaacgatggcggcaaaaatcattgaaaatgcc
gacatgcttagactctcctacgaacttgctaccattaaaaccgatgtggaacttgagcaa
gattggcatgagctcactgccaaacccgcagatagagacgaactgatcaaatgctacagc
gagatggagtttaagcgctggcttgccgaggtcttagataataaagcaccaacgaccgta
gtcgcggatgcggctaaagtcaaaacccaagaaagctctatgccaaatcctgcacttgaa
actcaatacgacacgattttaaccgaagctcagcttgatgaatggattgccaagctgaaa
caagcatcattaatagccgtggatacagagaccacgagtctcgactatatggtcgcggaa
ctggttggcatgtctttcgcagtggaagcaggcaaagccgcttacctgcctttagctcac
gattatgttggcgcgcctcaacagttagataagcaatttgcgctcgaaaaactacgccct
attttagaagacgataaggtcaaaaaagtcggccagaacctgaaatatgacatcagcgtt
ttggctaatgcgggcattaaattacagggtgtcgtatttgataccatgctcgaatcctat
gtttttaactccgtggcttcacgccatgatatggatggattagcgatcaagtatctaggc
cataaaaacattggctttgaagatattgcaggcaaaggggcgaaacaacttaccttcaat
caaatcccgttggaagttgcagccccgtatgctgcggaggatgcggatattactctgcgt
ttacaccagcacctatggccaaggctagaaaaagaaccccaattggcctcagtatttact
gaaattgaattacccttaatccaagtactatcagacattgagcgccaaggtgtattaatt
gatagcatgttactcggccaacagagtgatgagctagcgcgtaaaatcgataccttagaa
gaaaaagcctacgagattgcaggtgaaaaatttaatctcggttcacccaaacaactgcaa
gtgctattttttgaaaaactaggttatccaatcaccaaaaaaacaccaaagggcgcgcca
tcgaccgcggaagaagtattagtcgaattagccttagatttcccactgccaaaggtgatc
ctcgagcatcgcagcctatctaagttaaaaagtacttacacagataaactaccgctgatg
gtcaatgccaagactgggcgcgttcacacaagttaccaccaagctaatgcggcaacaggg
cgcttatcgtcaagcgagcctaacctgcagaatattcctattcgtaccgaagaaggtcgc
cgcattcgccaagcctttatcgcccctgcaggtcgtaaaattttggccgctgattattca
caaatcgaactgcggatcatggcacatctatcccaagatgcgggtctgctcaaagccttc
gccgagggtaaagacattcacagagccaccgctgccgaagtatttggaactgactttgat
gctgtaacaacagaacagcgacgccgcgctaaagccgtaaacttcggccttatttatggt
atgtcagcctttggtttagctcgtcaactggatattcctcgtaacgaagctcaaacctat
attgatacttacttcgcccgctacccgggagtgttaaggtatatggaagaaacgcgcgca
ggagcagcagaattaggatatgtttcaacactatttggtcgtcgcctctacttgcccgaa
atccgggatcgtaatgcaatgcgccgccaaggcgcagaacgtgctgcgattaacgcaccg
atgcaaggcacggctgccgatatcatcaaaaaagccatgatcaatattgcccagtggatc
aagacagaaacccaaggcgaaatcgccatgattatgcaagtccacgacgaattagtattc
gaagtcgatgccgataaagcagagacgctcaaacaaaaagtatgtgaactcatggcgaag
gctgcaatcctcgatgtagcattactcgcagaagctggcattggtgataattgggatgaa
gcccactaa
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