Sphingobium sp. CAP-1: GL174_03315
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Entry
GL174_03315 CDS
T10467
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spca Sphingobium sp. CAP-1
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spca03009
]
GL174_03315 (rimO)
Enzymes [BR:
spca01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
GL174_03315 (rimO)
Ribosome biogenesis [BR:
spca03009
]
Prokaryotic type
ribosomal protein modification factors
GL174_03315 (rimO)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QGP78132
UniProt:
A0A6I5YIL1
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All DBs
Position
MIN1:complement(671461..672828)
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AA seq
455 aa
AA seq
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MATKFPEAPKVGMVSLGCPKNLVDSERILTKLRSDGYQMSADYAGADVVLVNTCGFLDSA
KEESLEAIGEAIAENGRVIVTGCMGDEADVIRAKFPQVLAVTGAHQYEQVVNAVHDASPP
VPNAFVDLVPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSIRGDLVSRRIDAVLREAEK
LVHAGTKELLVISQDTSAYGVDTRHETRNWKGREVRAHMTDLARELGQLRTADGVAPWVR
LHYVYPYPHVDQVIPLMAEGLLTPYLDIPFQHAAPNVLKAMKRPANEAKVLDRVRKWRNI
CPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVEGAPANALPDAVPEE
VKEERYQRIMEKTAAISAAKLQAKIGRTLPVILDEVGEPDEEDGSIGATARSQADAPEID
GNVFLRDVGEGRKPGDMFNVLIEDADEHDLYGVPA
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaatttcccgaagcgccgaaagtcggcatggtgtcgctcggctgtcccaag
aatctcgtggactccgaacgcatcctcaccaagctgcgctccgacggctatcaaatgtcc
gcagactatgccggcgccgatgtggtgctggtcaatacctgcggctttctcgattcggcc
aaggaagaatcgctggaggcgattggcgaggcgatcgcggaaaatggccgggtcatcgtc
accggctgcatgggcgatgaggcggatgtgatccgcgcgaaattcccccaggtgctggcc
gtcaccggcgcgcatcaatatgagcaggtggtcaacgcggtgcatgacgcatcgccgccg
gtgccgaacgcctttgtcgatctggtgcccgaaggcgggctaaaactgacgccgcgccat
tacagctatctcaagatcagcgagggctgcaaccatcgctgctccttctgcatcatcccc
tcgatccgcggcgacctggtcagccgccgcatcgacgcggtgctgcgcgaggcggagaaa
ctggtccatgccgggacgaaggaattgctggtcatcagccaggatacgtccgcctatggc
gtcgatacccgccatgagacgcgcaactggaagggccgcgaggtgcgcgcccatatgacc
gatctggcccgcgaactgggccagttgcgtaccgccgacggcgtcgccccctgggtacgg
ctgcactatgtctatccctatccgcatgtcgatcaggtcattccgctgatggccgaaggg
ctgctgaccccctatctcgacattcccttccagcacgccgcgccaaatgtgctgaaggcg
atgaagcgccccgccaacgaagccaaggtgctggaccgcgtccgcaaatggcgcaacatc
tgccccgacatcgccatccgctccagcttcgtcgttggtttccccggcgagacggaggcg
gatttccaatatctgctcgactggctggacgaggcgcaactcgaccgcgtcggcgccttc
cgcttcgagccggtcgaaggcgcgcctgccaatgcgctgcccgacgcggtgcccgaagag
gtcaaggaagagcgctatcagcggatcatggaaaagaccgccgcgatcagcgccgccaag
ttgcaggccaagatcggccgcaccctaccggtcatcctcgacgaagtgggcgagccggac
gaggaggatggcagcatcggcgccacggcgcgcagccaggccgacgcgccggaaatcgac
ggcaatgttttcctgcgcgacgttggcgaaggacgcaagcccggcgacatgttcaacgtt
ctgatcgaggacgccgacgaacatgacctctacggggtgccggcctga
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