Sphingobium sp. CAP-1: GL174_05430
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Entry
GL174_05430 CDS
T10467
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spca Sphingobium sp. CAP-1
Pathway
spca03030
DNA replication
spca03430
Mismatch repair
spca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GL174_05430 (dnaE)
03430 Mismatch repair
GL174_05430 (dnaE)
03440 Homologous recombination
GL174_05430 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spca03032
]
GL174_05430 (dnaE)
03400 DNA repair and recombination proteins [BR:
spca03400
]
GL174_05430 (dnaE)
Enzymes [BR:
spca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GL174_05430 (dnaE)
DNA replication proteins [BR:
spca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GL174_05430 (dnaE)
DNA repair and recombination proteins [BR:
spca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GL174_05430 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
HHH_3
tRNA_anti-codon
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
QGP78487
UniProt:
A0A6I5YIW4
LinkDB
All DBs
Position
MIN1:complement(1132824..1136366)
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AA seq
1180 aa
AA seq
DB search
MPHAAFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKDE
GVQPVVGAMLGILRPGRPANAAPVHDWLALYAQDAGGYDNICALVSMAHLDRPVEDVPHV
TMEALEGRTDGVIALTAGGEGALARLFAEDQPDAAFAYAQRLEALFPERLYVEICRRLDP
IEGKAEPHLLDLAYDRGLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTSSPD
AWMKPAAEMKRLFEDLPEALANTLVVAQRCAIAAPKRKPILPSLAGDIEGEAAMLRDQAT
AGLEARLAKAGIVGEEARAPYFDRLKFETDIIVQMGFPGYFLIVADFIKWAKDHDIPVGP
GRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGV
SEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLQQLVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLNGRGVHVDLDTLAWDDPAVYELLQRG
DTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGQEEIEYPH
ILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVKAEMDAQRSRFVEG
CAQSDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAGSMAFD
IHLTEKLTVFVDDMRRMGLSCLPTDLNRSEADFTVEAVPYEGEDKRLGFAVRYALGGLKG
VGEKAMEQLVEERDKGGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGIHADRAGVHA
AAETILSVASSNAAARESGQGGLFGDAETPQADVRIPPHQAWTVADRMAQEKEAFGFYFS
AHPVDRYKHLADARGARSYGVICQAPMPAPNAEGRAMTIMAAMVEDVRWRETKRGARYAN
ATFSDQSGQFQASCFEEAACKAIEEMAADGDCALLIVELDRLPGEETPRVTVRGIEPFRV
IASASRMELTVDVETAQAVEALALLLADADGGRSEIFLRAPVGDGQAARLFLGDHYSLGA
DQVDAIATIKGLSIHKFERMDVKADGYRTRTRRTALRLVG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcctcatgccgctttcgttccgcttcgcgtcttttcctccttcaccatgcttgaaggg
gcgatcgatcccaagaaaatcgcgaaacaggccaaggcgctgggttttccggccgccgcc
atcaccgaccgtaatggcctgtacggctccatggccttttccgacgcctgcaaggatgaa
ggggtgcagccggtcgtcggcgcgatgctgggcatattgcggccggggcggccggccaat
gccgcgccggtgcatgactggctggcgctctatgcgcaggatgccggcggctacgacaat
atctgtgcgctggtgtcgatggcgcatctggaccggccggtcgaggatgtgccgcatgtc
acgatggaggcgctggaaggccggaccgatggcgtcatcgcgctgacggcggggggcgag
ggcgcgctggcgcggctgttcgccgaggaccagccggatgcggcgttcgcctatgcgcaa
aggctggaggcgctgtttccggagcggctctatgtcgaaatctgccggcggctggacccg
atcgaggggaaggcggagccgcatctgctcgacctcgcctatgatcgcggcctgcccttg
gtggcgaccaacccgacctgtttcgccgaaccgcattttcacgaggcgcatgacgtgatg
ctgtgcatcgccgacagcgcctatgtcgagacgcccgaccgccgcaccagctcgcccgac
gcgtggatgaagccggcggcggagatgaagcgcctgttcgaggatctgcccgaagcgctg
gccaatacgctggtggtcgcgcagcgctgcgccatcgccgcgcccaagcgcaagccgatc
ctgcccagcctggccggcgatatcgagggcgaggcggcgatgctgcgcgatcaggcgacg
gcggggctggaagcgcggctggccaaggccgggatcgtcggggaagaggcgcgcgcgccc
tatttcgaccggctgaagttcgagacggacatcatcgtccagatggggttccccggctat
ttcctgatcgtcgccgacttcatcaaatgggcgaaggaccatgatattccggtcgggccg
ggccgtgggtccggcgcggggtcgctggtcgcctgggcgctgaccatcaccgatctcgat
ccgctgcaactgggcctgctgttcgaacgcttcctgaacccggagcgcgtgtcgatgccc
gacttcgacatcgatttttgcgaaacccggcgcggcgaggtgatccgttacgttcagcag
aaatatggcgcggaccatgtggcgcagatcatcaccttcggtaagctcaaggcgcgcgcg
gtgctgaaggacaccggccgcgtgttgcagatgagctatggtcaggtcgaccggctggcc
aagctggtgcccaatcatccgaccgacccgtggacgctggagcggtcgctgaacggcgtc
agcgagttcaaggcggaatatgacaatgacaatcaggttaagcgcctgatcgactatgcg
atgaagctggagggctttccccgccacagctccacccatgcggcgggcgtggtgatcggc
gaccggccgttgcagcaactggtgccgctctatcgcgatccgcgatcggacatgccggtg
acgcagttcgacatgaaatatgtcgagggcgcggggctggtgaagttcgactttctgggc
ctcaagacgctgtcggtgctgcaaaaggcggtgcagttgctgaacgggcgcggggtccat
gtcgatctcgacacgctcgcctgggatgatccggcggtctatgaactgctccagcgcggc
gacacggtcggcgtgttccagctcgaatcggaagggatgcgcaagacgctggcggcggtg
cggccgaccaatttcggcgacatcatcgcgctggtgtcgctctaccgccccggcccgatg
gacaatatcccgatgttcggccgtcgcaagaacgggcaggaggagattgaatatccccat
atcctgttgaagccgatcctcgaagaaacctatggcatcttcgtttatcaggaacaggtg
atgcaggccgcgcagatcctagcgggttattcgctcggcgacgccgacctgctgcgtcgc
gccatgggcaagaaggtcaaggcggagatggacgcacagcgctcccgcttcgtggagggc
tgcgcacagagcgacatcaaaccggccaaggcgaacgaactgttcgatttgatcgacaag
ttcgccggctatggcttcaacaagtcgcacgcggcggcttacgccctgctcgcctatcag
acggcgtggctgaaggcccattatccggcggaattttatgccgggtcgatggcgttcgat
atccatctgaccgaaaagctgaccgtgttcgtggatgacatgcggcgcatgggcttgtcc
tgcctgccgaccgacctcaaccgcagcgaggcggacttcaccgtcgaggcggtgccttat
gagggtgaggacaagcgattgggctttgccgtgcgctatgcgctgggcggcctcaagggc
gtgggcgagaaggcgatggagcagcttgtcgaggaacgcgacaagggcgggccgttcaag
tcgctcgatgattttgccgaccggatcgaaccgcgcctgctcaaccggcggcaactggaa
agtctggcggcggcgggcgcgttcgatggcattcatgccgatcgggcgggcgtccatgca
gcggcggaaaccattctctcggtcgcgtccagcaatgccgccgcgcgcgaaagcgggcaa
ggcggcctgttcggcgacgcggaaacgcctcaggccgatgtgcggataccgccgcatcag
gcctggaccgtggcggaccgcatggcgcaggaaaaggaggcgttcggcttttatttctcc
gcccatccggtcgatcgctacaaacatctggccgatgcgcggggcgcgcgcagctatggc
gtcatctgtcaggcgccgatgcccgcgcccaatgccgaagggcgggcgatgacgatcatg
gcggcgatggtcgaggatgtgcgctggcgcgaaaccaagcgcggcgcgcgctacgccaac
gcgaccttctccgaccagagcgggcagtttcaggccagttgcttcgaggaagccgcctgc
aaggcgatcgaggaaatggcggccgatggcgattgcgcgctgctgatcgtggagctggac
cggctgccgggcgaggagacgccgcgcgtcacggtgcgcgggatcgagccgttccgggtg
atcgccagcgcgtcgcgcatggaactgaccgtcgacgttgaaaccgcgcaggcggtcgag
gcgctggcgctgttgctggcggacgcggatggcggccgcagcgagatattcctgcgcgcg
ccagtgggcgacgggcaggcggcgcggctgttcctgggcgatcattatagtctgggcgcg
gatcaggtagacgcgatcgcgacgatcaaggggctgagcatccacaagttcgagcggatg
gacgtgaaggcggacggatacaggacgcggacgcggcggacggcgctgcggctggtgggg
tga
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