Sphingobium sp. CAP-1: GL174_06995
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Entry
GL174_06995 CDS
T10467
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spca Sphingobium sp. CAP-1
Pathway
spca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL174_06995 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spca03019
]
GL174_06995 (pnp)
03016 Transfer RNA biogenesis [BR:
spca03016
]
GL174_06995 (pnp)
Enzymes [BR:
spca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GL174_06995 (pnp)
Messenger RNA biogenesis [BR:
spca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GL174_06995 (pnp)
Transfer RNA biogenesis [BR:
spca03016
]
Prokaryotic type
tRNA degradation factors
GL174_06995 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
BioW
Motif
Other DBs
NCBI-ProteinID:
QGP78764
LinkDB
All DBs
Position
MIN1:complement(1467760..1470093)
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AA seq
777 aa
AA seq
DB search
MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVMSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKAGELDLVVA
ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIELAEKAAKDPWDVAKGDDLD
DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAQFAADGLDAQTVMAGIKLTKK
LESEIVRGAILKDGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQSICTTTLGTK
DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISS
SDIAQIEAAKKWILGIVEEAEVGKVYVGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGDR
GDRGRGPRRDGGDRGGRGGDRGPRRDGGDRGPRRERSEGGKDDGPAPGGLPDFLTQD
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaggtatcaatcgagctggccggcaagacgctgaccctcgaaacc
ggccgtattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgaaaccgtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtccattatcaggaaaaatattcggccgccggtcgcattccgggtggcttcttcaagcgg
gagcgtggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgcccgatccgc
ccgctgttccccgaaggtttctataacgaaatcaacgttatcgctcaggtgatgtcgttc
gacggcgaaagcgaacccgatatcgtcgcgatgatcgccgcgtcggccgcgctgaccctg
tcgggcgtgcctttcctgggtccgatcggcgccgcgcgcgtcggttacaaggatggcgaa
tatcagctcaacccgtcgctggacgaagtgaaggccggcgaactcgacctggtcgtcgcc
gccaccggcaatgcggtgatgatggtcgaatccgaagccaaggaactgtcggaagacgtg
atgctcggcgccgttctcttcgcccatgaagcgtcgaagaaggtcgtcaacgcgatcatc
gagctggccgaaaaggccgcgaaggacccgtgggatgttgccaagggcgacgatctggac
gacctgaagaagaagctgaagaagctgatcggcaaggacatcacggcagcctacaagctg
accgacaagtcggcccgctccaacgcgctcaatgaagcccgcgccaaggcgaaggcccag
ttcgcggcagacggcctcgacgcccagaccgtgatggccggcatcaagctgaccaagaag
ctggaatcggaaatcgtgcgtggcgccatcctcaaggacggcaagcgcatcgacggccgc
accaccacccagatccgcccgatcgaggcgatggtcggcttcctgccgcgcacccatggt
tcggccctgttcacccgtggcgaaacgcagtcgatctgcaccaccacgctgggcaccaag
gacgccgagcagatgatcgacggcctcactggcctgcattatgaaaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgtcgt
gaagtcggccatggcaagctggcatggcgtgcgctgcatcccgtgctgccgaccaaggac
gagttcccctacaccatccgcgttctctcggacatcaccgagtcgaacggttcctcctcg
atggccaccgtctgcggcggttcgctgtcgatgatggacgcgggcgtgcccctgaagcgc
cccgtgtcgggcatcgccatgggcctgatcctggaaggcaagaatttcgctgtcctcagc
gacattctgggcgacgaggatcatctgggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggttgccggcatcacgcaggaaatcttc
gaagtcgcgttgcgtcaggcgaaggaaggccgcgcccatatcctgggtgagatgagcaag
gcgctgtcctcgacccgcaccgaactgtcggcccatgccccgcgcatcgagacgatccag
atcgacaagtcgaagatccgtgacgttatcggcaccggcggcaaggtcatccgcgagatc
gtcgcggaaaccggcgcgaaggtcgacattgacgacgaaggcgtcatcaagatcagctcg
tccgacatcgcccagatcgaagctgccaagaagtggattctgggcatcgtcgaggaagcg
gaagtcggcaaggtctatgtcggcaaggtcgtcaacattgtcgacttcggtgcgttcgtg
aacttcatgggtggcaaggacggcctcgtccacgtctccgaaatgaagaatgagcgcgtc
gaaaagccgaccgatgtcgtctccgaaggccaggaagtgaaggtcaaggttctggagatc
gacccgcgcggcaaggtgcgcctgtcgatgcgcgtcgtcgatcaggaaaccggtgaggag
ctggaggacacacgtccggctcgcgaaccgcgtgaaccgcgcggcgaccgtggtgatcgc
ggcgatcgtggtcgcggcccgcgccgtgacggcggcgaccgtggcggtcgcggtggcgat
cgtggtccgcgccgtgatggcggtgatcgcggcccccgccgtgaacgcagcgaaggcggc
aaggacgacggcccggcgccgggcggtctgcccgacttcctgacccaggactga
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