Sphingobium sp. CAP-1: GL174_09705
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Entry
GL174_09705 CDS
T10467
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spca Sphingobium sp. CAP-1
Pathway
spca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL174_09705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spca03019
]
GL174_09705
03009 Ribosome biogenesis [BR:
spca03009
]
GL174_09705
Enzymes [BR:
spca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GL174_09705
Messenger RNA biogenesis [BR:
spca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GL174_09705
Ribosome biogenesis [BR:
spca03009
]
Prokaryotic type
rRNA processing factors
GL174_09705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QGP80258
LinkDB
All DBs
Position
MIN1:2020455..2023094
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AA seq
879 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPREDREALLREEREHAEEEAALRADYDDEDEGHHGDDGVEVVE
ASHHHDDEEGADGEAAEAPRGNRRKGGNKGDDAADELRRKRMALRRRYKIQDVIKRRQVL
LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIIAEMA
LPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDLIKRAIR
DIYNKDIEEVIVEGEEGYRAAKDFMKLLMPSHARRVKQYADPISLFQRASVEDQLAAMYN
PVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLRDMA
GLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVLEAS
TRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSLITLRASQEAAFYVLNNKRRELD
EIEQRYGVTIAILPDGEIEGARMSVEASGPRPERVVDYTPLAEEEDDLDIIEEEEEEEEA
EEAEAAPEREERADRGDREDRDGGRRRRRRRRRRGGQRDEAHAEEGAVDAAEGSDADEAE
ADAAVTDEAVETVADAGEDEGGARRRGRRGRRGGRRRREGGEEGVSVDAETVEEAAEPVA
DVAPVEEAPAEEAAVEEAPKTRRRPRARKKAEAAEAVVEAVAETPAPVEAPVEAVAEEAP
AKPKRTRRKKADVVAETAPAEEAPAAEAVAEEAPVKPKRTRRKKADVVAEDAPAAVEAPA
EAEAAPAADVAIADAPAEGDGEAEEGAPRRGWWQRTFGE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgatgcgcgccaccgggaagaaacccgtgtcgcggtcgtcaaaggtaaccgg
atcgaggaattcgatttcgaatcggccgagcacaagcagctcaagggcaatatctatctg
gccaaagtgacccgcgtggagccttcgctccaggcggcgttcgtggattatggcggcaac
cgccacggcttcctcgctttcagcgaaatccacccggactattaccagatcccgcgcgag
gaccgcgaggcgctgctgcgcgaagagcgtgaacatgccgaggaagaggccgcgctgcgc
gcagattatgatgacgaggatgaaggtcatcatggcgacgacggcgtggaagtcgtcgaa
gccagccatcatcatgacgatgaggaaggcgcggacggcgaagccgccgaagcacccagg
ggcaaccgccgcaagggcggcaacaagggcgacgatgcggccgacgaactgcgccgcaag
cgcatggcgctgcgccgccgctacaagattcaggatgtcatcaagcgccgccaggtgctg
ctggtccaggtcgtcaaggaagagcgcggcaacaagggtgcggcgctgaccacttatctg
tcgctggccggccgctattgcgtgctgatgcccaacacgtcgcatggcggcgggatttcg
cgcaagatttcgaacgccgccgaccgcaagcgtttgaaaacgatcatcgccgaaatggcg
ctgccctccaccatgggctgcatcgtccgcaccgccggcctccagcgcaccaagccggag
atcaagcgcgacttcgactatctcgcccggctgtgggacgagattcgcgaaaagacgctg
aagtcggacgcgcccgcgctgatccacaatgacagcgacctcatcaagcgggcgatccgc
gatatctataacaaggatatcgaggaagtgatcgtcgagggcgaggaaggctatcgcgcc
gccaaggacttcatgaagctgctgatgcccagccatgcgcgccgggtgaagcaatatgcc
gatccgatctcgctgttccagcgcgccagcgtcgaggatcaactggcggcgatgtataat
ccggtcgtgcagttgaagtccggcggctatctggtcatcaacccgaccgaggctttggtg
tcgatcgacatcaactccggccggtcgacccgcgaacatggcatcgaacagaccgccgtc
gcgaccaatctggaagccgcgcgcgaaatcgcgcgccagttgcgcctgcgcgacatggcg
ggtctggtcgtcatcgactttatcgacatggagatgaactccaacatccgtaaggtcgaa
aaggcgatgaaggaggcgctgaaggacgatcgcgcccgcatccaggtcggccgcatttcg
ggcttcggtctgatggaaatgagccgccagcggctgcgcaccggcgttctcgaagcgtcg
acccgccagtgcccgcattgcgaaggcacgggccttgtccgcaccgcgtcgtcggcgggc
ctgggcgcgctgcgcatgttggaagaggaagcggcgcgcggtcgcggctccctcatcacc
ctgcgcgccagccaggaagcggccttctacgtcctcaacaacaagcgccgcgaacttgat
gagatcgagcagcgctatggcgtgaccatcgcgatcctgcccgatggcgagattgagggc
gcgcgcatgtcggtcgaggccagcgggccgcggccggagcgggttgtcgactataccccg
ctcgccgaagaggaagatgacctcgacatcatcgaggaggaagaggaagaagaagaggcc
gaggaagccgaggctgcgcccgaacgggaggaacgcgcggatcgtggcgatcgcgaggac
cgcgatggcggtcgccgtcgccgtcgccgtcgccgtcgccggggtggccagcgcgacgag
gcgcacgcggaagagggcgctgtcgacgcggccgagggcagcgatgcggacgaagccgag
gctgacgcagcagtcacggacgaagcggtcgaaaccgtagccgacgccggcgaggacgaa
ggcggcgcgcgtcgtcgcggccgtcgcggtcgccggggcggtcgccgccgtcgcgaaggc
ggcgaggaaggcgtgagcgtcgacgctgaaaccgtcgaggaagcggccgagccggttgcc
gatgttgcgccggtcgaagaagcgcccgccgaggaagcggccgtcgaagaggcgcccaag
acccgccgccggccccgcgcccgcaagaaggcggaagccgccgaggcggtcgtggaagct
gtcgccgaaacgccggctccggtcgaagcgccggtcgaggccgttgccgaggaagccccg
gccaagcccaagcgcacccgtcgcaagaaggcggatgtggtggccgaaactgcacccgcc
gaggaagcgcctgccgccgaggccgtggccgaggaagccccggtgaagcccaagcgcacc
cgccgcaagaaggcggatgtggtggccgaggacgcgcccgccgccgtcgaagcgcccgcc
gaggcggaggctgcgcccgccgccgatgtcgcgatcgccgacgcgcctgccgagggcgac
ggcgaagccgaggaaggcgcgccgcgccgcggctggtggcagcgcaccttcggcgaataa
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