Sphingobium sp. CAP-1: GL174_10125
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Entry
GL174_10125 CDS
T10467
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spca Sphingobium sp. CAP-1
Pathway
spca03410
Base excision repair
spca03430
Mismatch repair
spca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GL174_10125 (recJ)
03430 Mismatch repair
GL174_10125 (recJ)
03440 Homologous recombination
GL174_10125 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spca03400
]
GL174_10125 (recJ)
DNA repair and recombination proteins [BR:
spca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GL174_10125 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GL174_10125 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GL174_10125 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QGP79301
LinkDB
All DBs
Position
MIN1:complement(2099896..2101662)
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AA seq
588 aa
AA seq
DB search
MTFALNISRSISGQPWRWRGVGADTRGPGYLPDDLVTQLLLARGCPRDGVEAHRNPTIRA
FMPDPSLFRDMDAAAERLADAVQAQEDVRIFGDYDVDGATSAALLIRLLRDLGLNARPYI
PDRLMEGYGPSGEALVRLAGEGATLIVTVDCGAQAFEALAMAKATGVDVVVVDHHKCATQ
LPEAFALVNPNRLDEHPDAAVHGHLAAVGVAFLLGARLLKLLDARGWFASRGKPNILDLL
DIVALGTVADVAQLKGLNRAFVAQGLKVMAKRRNIGLSALIDTSRLTRAPLCHDLGFALG
PRINAGGRVGQADLGVRLLTTEDPAEAARIAAQLDQYNEERRAIESSVQEQAEALLAAQG
NRAVAVIAGQGWHPGVIGIVAGRIKEKAGRPAIVIAVDEAGVGKGSGRSISGVDLGAAVL
AAKDCGLLVAGGGHAMAAGLTVAADRIDALADYLDDRLSAAVARARDDRALLIDAVLAPA
GVNPDFVAAIEQGGPYGAGWPAPLIAAGPMRVIKADVVGNGHLRAIMAGDDGRSIKTIAF
RQAETDLGQAILGAPRDRRLWVAGKAKIDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgcgctcaatatttcgcgatcgatttcgggccagccctggcgctggcggggc
gttggcgccgacacgcgtggtcccggctatctgcccgatgatctggtgacgcaattgctg
ctggcgcgcggctgtccgcgtgacggggtggaggcgcatcgcaaccccaccatccgcgcc
ttcatgcccgatcccagcctgtttcgtgatatggacgcggcggccgagcgcctggccgat
gcggtccaggcgcaggaggatgtccgcatcttcggcgactatgacgttgacggcgcgacc
agcgcggcgctgctgatccggctgctgcgcgatctggggctgaacgcccggccctatatc
cccgaccggctgatggagggctatggcccgtcgggcgaggcattggtgcggctggcggga
gagggggcgaccctgatcgtcaccgtcgattgcggcgcgcaggcgttcgaggcgctggcg
atggcgaaggccacgggcgttgatgtcgtcgtggtcgatcaccataaatgcgccacgcaa
ctgccggaggcgttcgcgctggtgaaccccaaccggctggacgagcatcccgatgccgcc
gtccatgggcatctggcggcggtcggcgtcgccttcctgctgggcgcgcggctgctgaag
ttgctggacgccagaggctggttcgccagccggggcaagccgaacatattggacctgctc
gatatcgtcgcgctcggcacagtggcggacgtggcgcaattgaaggggctgaaccgcgcc
ttcgtggcgcaggggctgaaggtcatggccaagcgccgcaatatcggcctgtcggcgctg
atcgacaccagtcgcctgacccgcgcgccgctctgccatgatcttggctttgcgcttggc
ccgcgcatcaatgcgggcggccgggtgggacaggcggaccttggcgtgcgcctgctgacc
accgaagaccccgccgaagccgcgcgcatcgccgcccagctcgatcagtataatgaggag
cgtcgcgcgatcgaatcgagcgtgcaggaacaggccgaggcgctgctcgccgcgcagggc
aaccgcgccgttgcggtgatcgcgggacagggctggcaccccggcgtgatcggcatcgtc
gcaggccgcatcaaggaaaaggccggccgccccgctatcgtcatcgccgtcgatgaggcg
ggtgtgggcaaggggtcgggtcgctccatctccggcgtcgatcttggcgcggctgtgctg
gcggccaaggattgcggcctgctggtcgcgggtggcggccatgccatggcggcgggcctg
accgtcgccgccgaccggatcgacgcgctggccgactatctggacgatcgcctgtccgcc
gccgtcgccagggcgcgggacgaccgcgcgctgctgatcgacgcggtgctggcacccgcc
ggagtgaacccggatttcgtcgccgcgatcgagcagggcggtccctatggcgcgggctgg
cccgcgccgctgattgccgccgggccgatgcgcgtcatcaaggccgatgtcgtgggcaat
ggccatttgcgcgcgatcatggcgggcgacgatggccgctcgatcaagaccatcgccttc
cgtcaggccgaaaccgatctggggcaggcgatattgggcgcaccgcgcgaccggcggctg
tgggtcgcgggcaaggcgaagatcgacgattggggcagccgccccgccgccgaactgcat
ctggaggacgccgcctgggcggattag
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