Sphingobium sp. CAP-1: GL174_12140
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Entry
GL174_12140 CDS
T10467
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spca Sphingobium sp. CAP-1
Pathway
spca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL174_12140 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spca03021
]
GL174_12140 (rho)
03019 Messenger RNA biogenesis [BR:
spca03019
]
GL174_12140 (rho)
Transcription machinery [BR:
spca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GL174_12140 (rho)
Messenger RNA biogenesis [BR:
spca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GL174_12140 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
AAA_22
GpA_ATPase
AAA_25
NACHT
Fungal_virus_P2_C
AAA_14
AAA
Motif
Other DBs
NCBI-ProteinID:
QGP79647
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All DBs
Position
MIN1:complement(2521160..2522416)
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AA seq
418 aa
AA seq
DB search
MHLKDLKKTVPADLVTMAEELGVEGASTLRKQDLMFAILKAEAENGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLNTVN
FDDPDVVRHRVNFDNLTPLYPEQKLRLDTLDPTVKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVEKPTLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaaggacctcaagaaaacagttcccgccgacctcgtcaccatggccgaagaa
ctcggcgtggaaggcgcatcgacgctgcgcaagcaggatctgatgttcgcgatcctcaag
gccgaggcggaaaatggcgaacagatcatgggcgagggcacgatcgaggtgctgcccgac
ggcttcggcttcctgcgcagccccgaagccaatttcctggccggtcccgacgatatctat
gtctcgcccaaccaggtccgcaaattcggcctgcgcaccggcgacacggtggaaggcgaa
atccgcgcgcccaaggatggcgagcgctatttcgcgctgaccaagctcaacaccgtgaat
ttcgacgatcccgatgtcgtccgccaccgcgtcaatttcgacaatctgacgccgctctat
cccgaacagaaattgcggctcgacacgctcgacccgacggtcaaggacaagtcggcccgc
gtcatcgacatcgtcagcccgcagggcaagggccagcgcacgctgatcgtcgcgccgccc
cgcgtcggcaagacggtgatgctccagaatatcgccaaggcgatcaccgacaatcatccc
gaagtgttcctgatcgtgctgctgatcgacgagcgcccggaagaagtcaccgacatgcag
cgcagcgtgaagggcgaggtcgtctcctccacctttgacgaacccgccacccgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcctggtggaacataagaaggatgtg
gtgatcctgctcgattcgatcacccgccttggccgcgcctacaacaccgtcgtcccttcg
tcgggcaaggtgctgaccggcggtgtcgacgccaacgcgcttcagcggcccaagcgcttc
ttcggcgccgcgcgcaatatcgaggagggcggttcgctctcgatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaagtcattttcgaagagttcaagggcaccggcaac
tccgaaatcgtgctggaccgcaaggtcgcggacaagcgcatcttcccggcgctggatgtc
ggcaagtcgggcacccgcaaggaagaattgctggtcgaaaagccgacgctcagcaagatg
tgggtgctgcgccgcatcctgatgcagatgggtacggtcgacgcgatggaattcctgctg
gacaagatgaaggacagcaagaccaacgaagatttcttcgccaccatgaaccagtaa
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