KEGG   Sphingobium sp. CAP-1: GL174_12200
Entry
GL174_12200       CDS       T10467                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
spca  Sphingobium sp. CAP-1
Brite
KEGG Orthology (KO) [BR:spca00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spca03400]
    GL174_12200
Enzymes [BR:spca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GL174_12200
    5.6.2.6  RNA 3'-5' helicase
     GL174_12200
DNA repair and recombination proteins [BR:spca03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    GL174_12200
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 T4SS-DNA_transf
Other DBs
NCBI-ProteinID: QGP79658
LinkDB
Position
MIN1:2534999..2537410
AA seq 803 aa
MSVRLPAPVESWFAARGWRPRRHQMAMLAAAEQGDHALLVAPTGAGKTLAGFLPTLADLI
RDPMDGLHTLYVSPLKALAVDVRRNLLTPIEEMGLPIRVETRTGDTPSDRKARQRARPPQ
ILLTTPESLSLLLSYPDAALMFATLRTVIVDEVHAFATQKRGDLLNLSMARLQAINPALR
RVALSATVADIDAYRAWLAPDGDIAAVTPVLGEAGAEPNVAILIPEGRVPWSGHSGKYAA
AQVMAEISARETTLVFCNTRGLAELIFQSLWSVNDANLPIAIHHGSLSIEARRKVESAMA
AGKLRALVATASLDLGVDWGNVDCVIQMGAPKGSSRLLQRIGRANHRLDTPSEAILIPGN
RFEYLEARAALDAVEAGERDADDFRPGSLDVLAQHVMGLACAGPFRAEALLDEVRSATPY
SALTAEAFDHVLHFIEGGGYALRAYDRFKRLAQEPDGRWRVSHPRFIQQHRLNAGIIVDQ
PALAVRFANGRKLGTVEEGFAATLTPGDSFFFSGMALEVVRMDTADLVVRATSKQARIPS
WGGTRMAMSTRLADRVRHFLAEPEQWHRFPPDVREWLEMQTLRSTLPQPGQLLIETFPHE
GRHYLLCYSFEGWNAHQSLGMLLTRRMESQGLMPLGFVSNDYALAVYGLKPVTDPQSLFS
ADILDHEFVDWVEQSSLLKRAFRDVAVISGLIERQHPGKRKTGRQVTFSTDLIYDVLRKY
QPDHLLLKAAWADARARMTDVGRLGDLIDRAATTMLHVPLDRVSPLAVPVLILIGREHVG
QSAAEDALLVEAEALVAEAMRAD
NT seq 2412 nt   +upstreamnt  +downstreamnt
atgtcggttcgccttcccgcccctgtcgaaagctggttcgccgcgcgcggctggcggcca
cggcggcatcagatggcgatgctggcggcggcggaacagggcgatcatgccctgctggtc
gcaccgaccggggcaggcaagacgctggcgggtttcctgccgacactggccgatctgatc
cgcgatcccatggatgggctgcacaccctctatgtctcgccattgaaggcgctggcggtc
gatgtgcgccgcaacctgctgacccccatcgaggaaatggggctgccgatccgggtcgag
acgcggaccggcgacacgccgtcggatcgcaaggcgcgccagcgcgcccggccgccgcag
atattgctgaccacgcctgaatcgctgtcgctgctgctgagctatcccgacgcggcgctg
atgttcgcgactctgcgcacggtcatcgtggatgaggtccatgccttcgcgacgcagaag
cgcggcgacctgctcaacctgtcgatggcgcggttgcaggcgatcaaccctgcgctgcgc
cgggtcgccctgtccgccaccgtcgccgatatcgacgcctatcgcgcctggctcgcgccc
gatggcgatattgccgccgtgacgccagtgctgggcgaggcgggcgcggagccgaatgtc
gcgatattgattcccgaaggccgcgtcccctggtccggccattcgggcaaatatgccgcc
gcgcaggtgatggcggagatatcggcgcgcgagaccacgctggttttctgcaacacgcgg
ggtctggccgaactcatctttcagtcattgtggtcggtcaatgacgccaacctccccatc
gccatccatcatggcagcctgtcgatcgaggcgcggcgcaaggtcgaatcggcgatggcg
gcgggcaagctgcgcgcgctggtggcgaccgccagcctcgacctcggcgtcgactggggc
aatgtcgactgcgtgatccagatgggcgcccccaagggaagttcacgcctgctccagcgg
atcggccgcgccaatcaccggctggatacgcccagcgaggcgatcctgatccccggcaac
cgcttcgaatatctggaggcgcgcgccgcgctcgacgccgtggaggcaggggagcgggac
gccgacgatttccgccccggcagcctcgacgtgctggcgcagcatgtcatgggcctcgcc
tgcgccgggccgttccgggcggaggcgttgctggacgaggtgcgttccgccacgccctat
agcgcgctgacggcggaagcgttcgaccatgtgctgcatttcatcgagggcggcggctac
gccctgcgcgcctatgaccggttcaagcgactggcgcaggagccggacgggcgctggcgt
gtctcccacccgcgcttcatccagcagcatcggctgaacgccggtatcatcgtcgatcag
cccgcgcttgccgtccgcttcgccaatggccgcaagctcggcacggtggaggaaggcttt
gccgcgacgctgacgccgggcgacagtttcttcttctccggcatggcgctggaagtggtg
cggatggacacggccgatctggtggtccgcgccacgtcgaaacaggcgcgcatccccagt
tggggcggcacccgcatggccatgtccacccgccttgccgaccgggtgcgccactttctg
gccgaaccggagcaatggcatcgctttccgcccgatgtgcgcgaatggctggagatgcag
acactgcgctccaccctgccccagcccggccagctattgatcgagacattcccgcatgag
gggcgccattatctgctctgctacagtttcgaaggctggaatgcgcatcagtcgctcggc
atgttgctgacccggcggatggagagtcaggggttgatgcctctgggcttcgtgtcgaac
gattatgcgctggcggtctatgggttgaaacccgttaccgatccgcagagcctgttttcc
gccgacattctcgatcatgaatttgtcgactgggtcgaacagtcgagcctgttgaagcgc
gccttccgcgatgtcgcggtgatctccggcctgatcgagcggcagcatccgggcaagcgc
aagaccgggcggcaggtcactttctccaccgacctgatctatgacgtgctgcgcaaatat
cagcccgaccatctgctgctcaaggccgcctgggccgacgcgcgcgcgcgcatgaccgac
gtgggacggctgggcgacctgatcgatcgcgccgcgacgacaatgctgcatgtgccgctc
gaccgggtcagcccgctcgcggtgccggtgctgatcctgatcggccgtgagcatgtgggg
cagagcgcagcggaggacgcgctgttggtggaggccgaagcgctggtggcggaagcgatg
cgcgcggattag

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