Sphingobium sp. CAP-1: GL174_17665
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Entry
GL174_17665 CDS
T10467
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spca Sphingobium sp. CAP-1
Pathway
spca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GL174_17665 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spca03400
]
GL174_17665 (mfd)
Enzymes [BR:
spca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GL174_17665 (mfd)
DNA repair and recombination proteins [BR:
spca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GL174_17665 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QGP80905
UniProt:
A0A6I5YQS5
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All DBs
Position
MIN2:711594..715067
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AA seq
1157 aa
AA seq
DB search
MTDLQKILKAKAPLTLSGVPAGFQPWLLADIARAAGAANGRAVFIASDEQLMRAVADTAH
YFAPEIEIIEIPAWDCLPYDRASPSLRAASARLAGLYALQAKPKGPQLVLTTLAAMTQRT
LTPFRVRQLVAKLAPKERIAIQTLAQMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGEE
QPLRLDFFGDEIETVRRFDPADQRTIENVDGFTLLPASEALLDEETIKRFRGRYRETFGA
TATGDPLYQAVSDGRRLAGMEHWLPLFEERLVPLTDHLGDDAVLIRDHGVAGAAESRFEA
IRDYHANRIQAKSADPGAYRPLKPDSLYLAAADWDAAVATLPMHGTTPFHEPESATVLDF
SVDGPRDFAPERAQNTNIYEAVGKHIADLRRQKKKVVIASYSGGARERLSGLLADHGVAR
LAAADNWQEALGIAANGSVTLTVLGLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSADA
FLQELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAPHDCVALTYAGGDKLYVPVENLEVL
SRYGSDSEGVSLDKLGGEAWQRRKAKMKERIREIAGELLKTAAERALRAATVAEPDTAGY
PAFVDRFPYQETEDQDRAISDVVEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGM
QVVVICPTTLLARQHHMNFEERFRGFPVNIGRLSRLVPDKEAKATKAGLADGTIDIVVGT
HALLAKGLEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGL
RELSVIQTPPVDRLAVRTYIMPWDGVVIREALLREHYRGGQSFFVVPRIADLTEVEEFLR
TEVPEIKPIVAHGQMSATDVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADR
FGLAQLYQLRGRVGRSKTRAYAYFTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHDL
DIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAIMDAKAGGVGLETRRDSFSPQITVDAPI
LIPDDYVPDLDLRMGLYRRINELEDRNGLEAFAAELIDRFGKLPLPTQNLLKIIEIKQNC
LIANISKIDVGPKGALVSFFEDRFPKPAGLVAYVQKLNGVARLRPDSKIVVERAWPDPQA
RLNGALQLSKGLMKAAG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctccagaaaatcctgaaggcaaaagcgccgctcactttgtcgggcgtcccc
gccggcttccagccctggctgctggccgacatcgcccgcgccgcaggggccgcgaatggc
cgcgccgtctttatcgcgtccgacgagcagttgatgcgcgcggtcgcggacacggcgcat
tatttcgcgccggagatcgaaatcatcgaaattcccgcctgggactgcctgccctatgac
cgcgccagcccctcgctgcgcgcggcctcggcgcgactggcgggcctctacgcgctgcaa
gccaaacccaaaggcccgcaactcgtcctcaccacgctggcggcgatgacccagcgcacg
ctcaccccgttccgcgttcgtcaactggtcgccaaactcgcaccaaaagaacggatcgcc
atccagacactggcgcagatgcttcaggcgaacggctatgttcgcaccgacactgtccat
gaccggggcgaattcgccattcgcggcggcatcgtggacctgttcccaggcggcgaggaa
cagccgctccgcctcgactttttcggcgacgagatcgagacggtccgccgcttcgacccc
gccgaccagcgcacgatcgagaatgtcgacggcttcaccctcctccccgcctccgaagcc
ttgctggacgaggaaacgatcaagcgcttccgcggccgctatcgcgagacgttcggcgcg
accgcgaccggcgatccgctctatcaggcggtcagcgacggccgccgcctcgccggcatg
gaacattggctgcccctgttcgaagaacgcctcgtccccctgaccgaccatctgggcgac
gacgccgttctgatccgcgaccatggcgtcgccggcgcggcggaaagccggttcgaggcg
atccgcgactatcacgccaaccgtatacaggcgaaatccgccgaccccggcgcctatcgc
ccgctgaaacccgactccctctatctcgccgccgccgactgggacgccgccgtcgcgacc
ctgccgatgcacggcaccacgccgttccacgaaccggaaagcgcgaccgtcctcgacttc
tcggtcgacggcccccgcgatttcgcgcccgaacgcgcgcagaacacgaacatctacgaa
gccgtcggcaagcatatcgccgacctgcgccgccagaagaagaaagtcgtcatcgccagc
tattccggcggcgcgcgcgaacgtctctccggcctgctcgccgaccatggcgtcgctcgc
ctcgccgccgccgacaattggcaggaagcgctcggcatcgccgccaatggcagcgtcacc
ctcaccgtcctcggcctcgaccatggcttcaccgcgcccgatgtcgccgtcctcaccgaa
caggatatgctcggcgaccgcctcgtccgccgcgccaagcgcaagaagagcgctgacgcc
ttccttcaggaactggccaccctctcgcccggcgacctcgtcgtccatatggaccatggc
attggccgctatgaagggctgacgcaaatcccggtggccaaagccccgcatgactgcgtg
gcgctgacctatgccggcggcgacaagctctatgtccccgtcgaaaatctcgaagtcctc
tcccgctacggctccgacagcgagggcgtcagcctcgacaagctcggcggcgaagcctgg
cagcggcgcaaggccaagatgaaggagcgcatccgcgaaatcgcgggtgaattgctcaag
accgccgccgaacgcgccctgcgcgccgccaccgtggcggagccggataccgccggctac
cccgccttcgtcgaccgcttcccctatcaggaaaccgaggatcaggaccgcgccatcagc
gacgtggtggaggatctgggcgcaggcaagccgatggaccgcctcgtctgcggcgacgtg
ggcttcggcaagaccgaagtcgccctgcgcgccgccttcgtcgcggcgatggccgggatg
caggtggtggtcatctgccccaccacgcttcttgcccgccagcatcacatgaatttcgag
gagcgtttccgcggcttcccggtcaatatcggccgcctctcccgcctcgtccccgacaag
gaggcgaaggcgaccaaggcggggctggccgacggcacgatcgacattgtcgtcggcacc
cacgcgctgctcgccaaggggctggagttcaagcgcctcggcctcgtcatcgtggacgag
gaacaaaggttcggcgtcacccacaaggaacggctgaagtcgctcaagaccgacgttcat
gtcctgacgctcaccgccacgccgatcccccgcacgctgcaaatggcgatgtcgggcctg
cgcgaactgtccgtcatccagaccccgccggtcgatcgcctcgcggtccgcacctacatc
atgccctgggatggcgtggtgatccgcgaagccctgctgcgcgaacattatcgcggcggg
caaagcttcttcgtcgtgccgcgcatcgccgacctcaccgaagtcgaggagttcctgcgc
accgaagtccccgaaatcaaaccgatcgtcgcccatggccagatgagcgccaccgatgtc
gaagagcgcatgtccgccttctacgacaagcgctatgacgtgctgctgtccacgacgatc
gtggaatccggcctcgacattcccagcgccaacacgctcatcatccaccgcgccgaccgt
ttcggcctcgcgcaactctaccagctgcgcggccgcgtggggcgctccaagacgcgcgcc
tacgcctatttcaccactcccgccaaccgcatcatcaccgaaacggccgaaaagcggctc
aaggttctctccgacctcgacacgctcggcgcaggcttccaactcgcgtctcacgatctg
gacattcgcggcgcgggcaacctcgtcggcgacgagcaatcgggccatatcaaggaagtc
ggcttcgaactttatcagtcgatgctggaggatgcgatcatggacgccaaggccggcggg
gtcgggctggaaacccgccgcgacagcttctcgccccagatcaccgtcgacgcgccgatc
ctcatccccgacgattatgtgcccgacctcgacctgcgcatgggcctctatcgccgcatc
aacgaactggaggaccgcaacggtctggaagcgttcgccgccgaactgatcgaccgtttc
gggaaattgccattgccgacgcaaaacctgctcaagatcatcgagatcaagcagaactgt
ctgatcgcgaatatttccaagatcgacgtgggaccaaagggcgcgctcgtcagcttcttc
gaggaccgcttccccaagcccgccggcctcgtcgcctatgtgcagaaactcaacggcgtc
gcccgcctgcgccccgacagcaagatcgtcgtggaacgcgcctggcccgacccgcaggcg
cggctgaacggcgcgctgcaactgtccaaggggcttatgaaggcggcggggtga
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