Sphingobium sp. CAP-1: GL174_20750
Help
Entry
GL174_20750 CDS
T10467
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
spca Sphingobium sp. CAP-1
Brite
KEGG Orthology (KO) [BR:
spca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spca03000
]
GL174_20750
Transcription factors [BR:
spca03000
]
Prokaryotic type
Helix-turn-helix
Other families
GL174_20750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
GAF
AAA_5
Mg_chelatase
HTH_30
HTH_50
HTH_Tnp_ISL3
AAA_16
HTH_7
HTH_28
AAA_22
HTH_22
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QGP81542
LinkDB
All DBs
Position
p3:22725..24767
Genome browser
AA seq
680 aa
AA seq
DB search
MFASVEQASMTGDKDVRMERGISAVRSRRRAPHRSERQRYERQSMNLEQVRQTRRARDLF
FSGESIVSQWVPEPITRSWERSRRLGLSASDKRLFDMAAPGERRIATERGERLIRYAMPE
MTRLYKAFHTQDWVLACLDVSGFVICSIGDAEGPCRELESLFRNGVSLSESAIGTGAPGC
ALVEQKPFIVHANEHFLDEIHGYSCAAVPLFDVNGDLIGVLNATCRSGRDLSSVCEALRV
AARAIENHMLLDLPGALHVSLHYHPDLLRTPLAAVLAFSEHGQLLGGNQIARKLLGHTRS
ATEFDHMFDLPFARAVDELSGRNAEPIVTDTPAGIRVHLSLARHADDVMRVGKALLPPPS
GKRSSHASSDMFCSDPALLDTIGDAKLAFARDIPVLLTGETGTGKEVLARELHASGPRRN
GPFVPVNCASIPDGLIEAELFGYVEGAFTGARRGGAPGKFEQAHGGTLFLDEIGDMPLSL
QARLLRVLQERAVMPVGGSKDRPIDISLVCATHRDLKALVATGEFREDLYYRIDGLCVTL
PPLRERADLSELIGQIVDREIGDRLTLSLSDDALECLRSFAWPGNIRQLSLILRRAIALA
AGSALIAPRHLPEEMRQTRSNVGREVASLERTERDAVLMALHQCAGNIAATARQLGVGRP
TLYRKMRKYNIEVQGVKTIF
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgcgtccgtcgaacaagctagcatgacgggcgataaagatgttcgaatggagaga
gggatcagcgccgtccggtccaggcgccgggcaccccaccgttcggaaagacaacggtac
gagaggcaatccatgaatctggaacaggtccgccagacaaggagggcacgagatcttttc
ttctcgggcgagagtatcgtgtcgcagtgggtgcccgagccgatcacgcgttcctgggag
cgatcaagacgcctgggtttgagcgcgtccgacaagaggttgttcgacatggcggcgcct
ggcgaacgccggatcgccacagaaaggggtgaacggctcattcgctatgcgatgccggag
atgacacggctttacaaagcgtttcacacgcaggattgggtgctggcctgccttgacgtc
agcggatttgtcatttgctcgatcggcgacgccgaagggccgtgccgcgaactggagagt
cttttccggaacggggtttccctcagcgaaagtgcgatcggcaccggagcgccgggatgc
gcgctcgtggaacagaaaccctttattgtccacgccaacgagcatttccttgacgagatt
catggctattcttgcgcggccgttcctctgttcgacgttaacggggacctgatcggcgtc
ttgaatgccacctgccgcagcggcagggatctgtcatcagtttgcgaggcgttgcgggtt
gccgcccgagccatagaaaatcatatgctgcttgaccttccgggcgctctgcacgtctcg
ttacattatcaccctgacctgcttcgcacgcccttggctgccgttctcgctttctcggaa
catgggcaattgctcggtgggaaccagatcgcgcgcaagctgcttgggcatacgcgttcg
gcgacagagttcgatcacatgttcgacctgccttttgcgcgtgcggttgacgagcttagc
ggccgcaatgccgaaccgatcgtgacagacacgccggccggcatccgcgtccacctcagt
ctcgcccgccatgcagatgacgttatgcgggttggtaaggcgctcttgccgccgccctcg
ggcaagcgttcgtctcatgcctcttctgacatgttctgttccgatcccgccctgctggac
accattggcgacgcgaagctggcgttcgctcgtgatattcctgttctcctaaccggcgag
acgggaactggaaaggaggttcttgcgcgggagctgcacgcctcagggccgcggcgaaac
gggccgttcgtgccggtaaattgtgcgtccattcccgacggactgatcgaggccgaattg
ttcggatatgtggaaggggcgtttaccggcgctcgccggggaggcgctccgggtaaattt
gagcaggcccatggtggaacactcttcctggatgagatcggggacatgccgctctcgcta
caggctcgtcttctgcgggttctgcaggagcgggccgtcatgccggtgggcggatcgaag
gacaggccgatcgatatctctctggtctgtgcgacccatcgtgacctcaaggcgctcgtc
gccacgggcgaatttcgggaagacctttactaccgcattgatggactctgcgtcaccttg
ccccccttacgcgagcgagcggatttgtcggaactcataggacaaatcgtcgatcgcgaa
atcggcgatcgtttgacactttccctctcggatgacgcactggaatgtctgcggtccttc
gcatggcccgggaacatccgccaactgagcctcattcttcgtcgggccatcgcgctcgct
gccgggagcgcgctgatcgcgccaaggcatcttccagaggagatgaggcaaactcgttcg
aatgtggggcgcgaggtggcttcgctcgaacgaacggagcgggatgcggtattaatggcg
ctccatcaatgtgcgggaaatattgccgctacggctcgtcaattgggggtcggccggccg
acgctttatcgtaagatgcgtaagtataatatcgaagtgcagggcgttaagaccatattt
taa
DBGET
integrated database retrieval system
