Sphingomonas sp. CL5.1: F9288_02340
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Entry
F9288_02340 CDS
T11042
Name
(Genbank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F9288_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spcl03021
]
F9288_02340
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_02340
Enzymes [BR:
spcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F9288_02340
Transcription machinery [BR:
spcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F9288_02340
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F9288_02340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF211
Motif
Other DBs
NCBI-ProteinID:
QKR98608
UniProt:
A0A6N0WY91
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All DBs
Position
complement(487604..488665)
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AA seq
353 aa
AA seq
DB search
MSVNAKNWQELKKPNALEKKGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAAV
TSIKIENVLHEFSSLAGVREDVTDIVLNVKQVALKMQGEGPKRLQLSATGPAAVTAGDIA
VSGDIEVMNPDLVICHLDEGATLNMELTADVGKGYVPAVANRPADAPIGLIPVDALYSPV
RQVSYKVDPTRVGQDLDYDKLTLSLETDGTVTPEDALAYAARILQDQLALFVHFDDSAIA
RSAPIGVAAPAAGAEPQGDTQQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVGKTE
AEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgtcaacgcaaagaactggcaggaactgaagaagcccaacgcgctcgagaagaag
ggcggcgacgggaagcgcaaggcgaccttcgtcgccgagccgctggagcgtggcttcggc
ctgacgctcggcaacgcgctgcgccgcgtccttctgtcctcgcttcagggcgccgccgtc
acctcgatcaagatcgagaacgtgctgcatgagttcagctcgctcgccggcgtgcgcgag
gatgtcaccgacatcgtgctgaacgtgaagcaggtcgcgctcaagatgcagggcgagggg
ccgaagcggctccagctttccgccaccggcccggccgccgtgacggcgggcgacatcgcg
gtgagcggcgatatcgaggtgatgaaccccgatctcgtcatctgccacctcgacgagggc
gcgacgctcaacatggagctgaccgccgacgtcggcaagggatacgtcccggccgtcgcc
aaccgtccggccgacgcgccgatcgggctgatcccggtcgatgcgctttattcgccggtg
cgtcaggtcagctacaaggtcgatccgacccgcgtcggtcaggacctcgactatgacaag
ctgacgctgtcgctcgagaccgacggcacggtgacgccggaggacgcgctcgcttatgcc
gcgcgcatcctgcaggaccagctcgcgctgttcgtccacttcgacgattcggcgatcgcg
cgctcggccccgatcggcgtcgcggccccggccgccggcgcggagccgcagggcgacacc
cagcagatcaaccgctacctgctcaagaaggtggacgaactggagctgtcggtgcgttcg
gcgaactgcctgaagaacgacaacatcatctatatcggcgacctcgtcggcaagaccgag
gcggagatgctgcgcaccccgaacttcggccgcaagtcgctgaacgagatcaaggaagtg
ctgtcgtcgatgggcctgcgtctcgggatggaaatccccggctggccgccggagaacatc
gaggaaatggccaagaagctcgagcaggagatcatgggctga
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