Sphingomonas sp. CL5.1: F9288_03900
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Entry
F9288_03900 CDS
T11042
Symbol
recQ
Name
(Genbank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9288_03900 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spcl03019
]
F9288_03900 (recQ)
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_03900 (recQ)
Enzymes [BR:
spcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9288_03900 (recQ)
Messenger RNA biogenesis [BR:
spcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F9288_03900 (recQ)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F9288_03900 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
RQC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QKR98888
UniProt:
A0A6N0WYY7
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All DBs
Position
776735..778495
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AA seq
586 aa
AA seq
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MLADPVSTLQRIFGFPDFRGVQRDVVGRVLAGENTLAVMPTGAGKSLCYQLPAVMLEGTC
VVVSPLIALMHDQLRAAEAVGIRAATLTSVDENRAETRGRFLDGGLDLLYVAPERASTAD
FRDLLQRGRIALFAIDEAHCVSEWGHDFRPDYRLLRPLLDSFPDVPRLALTATADAHTRA
DILDQLGIPHDGMIVAGFDRPNIRYSITPRDNSTRQILDLIRATPGPGIVYAQTRAGTER
LAEALAVTGRPVRAYHAGLEPAVRAANQAAFVASEDMVICATVAFGMGIDKPDVRFVAHA
GLPKSIEAYYQETGRAGRDGDPAVAHLFWGADDFARARQRIAEVEERRQPGERARLNALG
ALVETAGCRRRILLRHFGEEPPESCGNCDNCLSPPSAIDASTVAQKYLSAVFRTGQMFGS
TYVEQVLTGKSTERSLMNGHESLSVWGIVDGEETALLKPVGRALQLRDALRANPHGGLEF
GPAARAILKGEEQVALVLPPRRERRRKGEAAANPVGDPLFEALREKRRDLAKEAQVPPYV
IFHDSVLREMAASRPASLTQMARIAGIGQRKLDAYGEAFLRVIHEN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccgacccggtttccaccctccagcgcatcttcggcttccccgactttcgcggc
gtccagcgcgacgtggtgggccgcgtgctggcgggcgagaacacgctggcggtgatgccg
accggcgcgggcaagtcgctgtgctaccagcttccggcggtgatgctggaggggacatgc
gtcgtcgtctccccgctgatcgcgctgatgcacgaccagcttcgcgcggccgaggcggtg
ggcatccgcgccgcgacgctgaccagcgtggacgagaatcgcgccgagacgcgcgggcgc
ttcctcgatggcgggctggacctgctctatgtcgcgccggaacgcgcctcgaccgccgat
ttccgcgatctgctccagcgcgggcgcatcgcgttgttcgctatcgacgaggcgcattgc
gtcagcgaatggggccatgacttccgccccgactatcgtctgctgcgcccgctgctcgac
agcttcccggacgtcccccgcctcgcgctcaccgccaccgccgatgcgcatacccgcgcc
gacatcctcgaccagctcggcattccgcacgacgggatgatcgtcgccggcttcgaccgg
ccgaacatccgctactccatcaccccgcgcgacaatagcacgcggcagatcctcgacctg
atccgcgccacccccggccccggcatcgtctatgcccagacgcgcgccggcaccgagcgg
ctggccgaggcgctggccgtcaccggccgcccggtgcgcgcctatcacgccgggctggag
ccggcggtgcgcgccgccaaccaggccgccttcgtcgcgtccgaggacatggtgatctgc
gccacggtcgccttcggcatggggatcgacaagcccgacgtgcgcttcgtcgcccatgcc
ggcctgcccaagtcgatcgaagcttattatcaggagaccggccgcgccgggcgcgacggc
gatccggcggtggcgcatctgttctggggcgccgacgatttcgcccgcgcccgccagcgc
atcgccgaggtggaggagcgccgccagcccggcgagcgcgcacggctcaacgcgctcggc
gcgctggtcgagacggccggttgccgccgccgcatcctgctcaggcatttcggcgaggag
ccacccgaaagctgcggcaattgcgacaattgcctgtcgccgcccagcgcgatcgacgcg
agcacggtggcgcagaaatatctctccgccgtgttccgcaccgggcagatgttcggatcg
acctatgtcgagcaggtgctcaccggcaaatcgaccgagcgcagcctgatgaacggccat
gaatcgctctccgtctgggggatcgtcgacggcgaggagacggcgctgctcaagccggtc
ggccgcgcgctccagctccgcgacgcgctgcgcgccaatccgcacggcgggcttgagttc
ggccccgccgcccgcgcgatcctgaagggcgaggagcaggtcgcattggtcctgccgccc
aggcgcgagcgccgccggaagggcgaggccgccgccaacccggtcggcgatccgctgttc
gaggcgctgcgcgagaagcgccgcgatctcgcgaaggaggcgcaggtgccgccttatgtc
atcttccacgattcggtgctgcgcgagatggcggcgtcccgaccggcctcgctgacgcaa
atggcgcggatcgccggcatcgggcagcgcaagctcgacgcctatggcgaggcgttcctc
cgggttatccacgaaaactga
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