Sphingomonas sp. CL5.1: F9288_05635
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Entry
F9288_05635 CDS
T11042
Symbol
polA
Name
(Genbank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03030
DNA replication
spcl03410
Base excision repair
spcl03420
Nucleotide excision repair
spcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9288_05635 (polA)
03410 Base excision repair
F9288_05635 (polA)
03420 Nucleotide excision repair
F9288_05635 (polA)
03440 Homologous recombination
F9288_05635 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spcl03032
]
F9288_05635 (polA)
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_05635 (polA)
Enzymes [BR:
spcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F9288_05635 (polA)
DNA replication proteins [BR:
spcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F9288_05635 (polA)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
F9288_05635 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9288_05635 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DprA_N
HHH
HHH_2
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
QKS01967
LinkDB
All DBs
Position
complement(1111626..1114385)
Genome browser
AA seq
919 aa
AA seq
DB search
MPHLYLVDGSGYIFRAYHVLPKLTNQHGEPAGAVYGYTTMLWKLAKELHEADGPTHLAVI
LDASEHTFRNEMYDKYKAQRPPAPEDLVPQFPMIRDATRAFSLPCIEERGWEADDLIASY
AKAALAQGWQVTIISSDKDLMQLLTEPGIDMLDTMRDRRMGPEAVVEKFGVGPDKLGEVL
ALMGDSVDNVPGVPGVGPKTAAKLITEYGDVEAVLAAAPGMKPGKLRENLIAHAEMARLS
RRLVELASDVPLPHPLEEMELNGIPEAPLHAFLEHHGFKSLLAKLGQVADAPQPAPSPAV
VLEEDPPCDHDTYETVSDEAALDRWIAAARHQGHVAIDTETTAKDPMLAELVGVSMALAP
NRACYIPLAHGGTDMFAEKPVQIGRDVALAKLRPLLEDPGVLKIGHNLKYDLIVLARCGV
DVAPYDDSIVMSFDLDAGLHGHGMDELAATHLSHSCIAYKDVVGTGKKQLGFHEVDLKAA
TRYAAEDADVTLRLWRRFRARLPAEGATRIYQMVDRPLVPVIARMERHGIKVDRERLAQL
SRGFDAGIATLETTIHGLAGGPFTIGSPKQLGDVLFERLGIKGGRKGKSGVYSTDVNELE
RIAADKDSPGAEIAARVLDWRQLSKLKSTYTDALQEQIHPETGRVHTSYSLTGAQTGRLS
STDPNLQNIPIRTETGRQIRDAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFARG
DDIHAMTARELFGELSRDTRARAKTINFAILYGISRWGLAGRLDVSSDEAQAMIDRYFER
FPGINRYIAETLTHVRERGFTETLFGRKTHFPRIKSKVQHERQGAERAAINAPIQGSSAD
IIKRAMARMEPALAEAGLTATRMLLQVHDELVFELPASEVDAARPVIERVMASAAEPVVK
LDVPLAVEIGVGESWGAAH
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatctctatctcgtcgatggctcgggctatatctttcgcgcctatcacgtcctg
cccaagctcaccaaccagcacggcgagccggctggcgcggtctatggctatacgacgatg
ctgtggaagctcgccaaggagctgcacgaggcggacgggccgacgcacctcgcggtgatc
ctcgacgcatcggaacataccttccgcaacgagatgtacgacaagtacaaggcgcagcgc
ccgcccgcgccggaagacctcgtcccccagttcccgatgatccgcgacgcgacgcgcgcc
ttctcgctgccctgcatcgaggagcgcgggtgggaggcggacgacctgatcgcctcttat
gccaaggcggcgctggcgcagggctggcaggtgacgatcatcagctcggacaaagacctg
atgcagctccttaccgagccgggcatcgacatgctcgacacgatgcgcgaccggcggatg
gggccggaagcggtggtcgagaagttcggcgtcgggccggacaaattgggcgaggtgctg
gcgctgatgggcgacagcgtcgacaatgtccccggcgtccccggcgtcggccccaagacc
gctgcgaagctcatcaccgaatatggcgacgtggaggccgtgttggccgccgcgccgggg
atgaagccgggcaagctgcgcgagaatctcatcgcgcacgccgagatggctcggctaagc
cgccggctggtcgagctggcgagcgacgtgccgctgccgcacccgctggaggagatggag
ctgaacggcatcccggaggcgccgctgcacgccttcctggagcatcacggcttcaagtcg
ctgctcgccaagctggggcaggtggccgacgcgccgcagcccgcgccctcccccgccgtg
gtgctggaggaagacccgccgtgcgaccatgacacctatgagacggtgtcggacgaggcg
gcgctggaccgctggatcgcggcggcgcggcatcagggccatgtcgcgatcgacaccgag
acgacagcgaaagacccgatgctggccgagctggtcggcgtcagcatggcgctcgccccc
aatcgcgcctgctacatcccgctcgcgcacggcggaacggacatgttcgccgagaagccg
gtgcagatcggccgcgacgtggcgctggcgaagctgcgcccgctgctcgaggaccccggt
gtgctcaagatcgggcataacctgaaatacgacctgatcgtgctggcgcggtgcggcgtg
gatgtcgcgccctatgacgattcgatcgtgatgagcttcgatctcgatgcggggctgcac
gggcacggcatggacgaactggccgcgacgcacctgtcgcatagctgcatcgcgtacaag
gacgtggtcggcaccggcaagaagcagctcggcttccacgaggtcgatctcaaggccgcc
acgcgctacgccgccgaggacgccgacgtgacgctcaggctgtggcggcgcttccgcgcg
cggctgccggcggagggggcgacgcgcatctaccagatggtcgatcgcccgctggtgccg
gtgatcgcgcggatggagcgccacggcatcaaggtcgatcgcgagcggctggcgcaattg
agccgcggcttcgatgccgggatcgccacgctggagacgacgatccacggcctcgccggc
ggccccttcacgatcggcagccccaagcaactgggcgacgtgctgttcgagcggctggga
atcaagggcggacgcaagggcaagtccggcgtctattcgaccgacgtgaacgagttggag
cggatcgccgccgacaaggattcgcccggcgcggagatcgccgcgcgcgtgctcgactgg
cggcagctcagcaagctcaagagcacctataccgatgccttgcaggagcagatccacccg
gagaccggccgcgtccacaccagctacagcctgaccggcgcgcaaaccgggcgactctcc
tcgaccgacccgaacctccagaacatcccgatccgcaccgagaccggccgccagatccgc
gacgccttcgtggcggagccgggcaatgtcatcctcgccgccgattattcgcagatcgaa
ttgcggctcgccgcgcacatggccgacgtgcccgcgctcaaggaggcgttcgcgcgcggc
gacgacatccacgcgatgaccgcgcgcgaattgttcggcgagctgagccgcgacacccgc
gcgcgcgccaagacgatcaacttcgcgatcctctacggcatcagccgctggggcctcgcc
gggcggctcgacgtgtcgtcggacgaggcgcaggcgatgatcgaccgctatttcgagcgt
ttccccggcatcaaccgctatatcgccgaaacgctgacccatgtgcgcgagcgcggcttc
accgagacgctgttcggtcgcaagacgcacttcccgcgcatcaaatccaaggtgcagcac
gagcggcagggcgcggagcgcgcggcgatcaacgccccgatccagggttcgtccgccgac
atcatcaagcgcgcgatggcacggatggagccggcgctggccgaggcggggcttaccgcc
acgcggatgctgctccaggtgcacgatgaactggtgttcgagctgccggcgagtgaagtg
gacgccgcgcgccccgtgatcgagcgcgtcatggccagcgccgccgagccggtggtgaag
ctcgacgtgccgctggcggttgagatcggcgtcggcgaaagctggggagcggcgcattga
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