Sphingomonas sp. CL5.1: F9288_11330
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Entry
F9288_11330 CDS
T11042
Symbol
xth
Name
(Genbank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F9288_11330 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_11330 (xth)
Enzymes [BR:
spcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
F9288_11330 (xth)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
F9288_11330 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
A6_N
Motif
Other DBs
NCBI-ProteinID:
QKS00152
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All DBs
Position
2334627..2335397
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AA seq
256 aa
AA seq
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MKIVSYNVNGIKARLPRLLEYLTEQQPDIVCLQELKSSDDTFPEADIRAAGYGAVWHGQK
GFNGVAVLARAADPVERQRGLEGDPDDAHSRYLECDVDGLVIASIYLPNGNPQPGPKFDY
KLRWMERLADRARALLAEEVPAVLAGDYNVIPNDDDTFSVRAMADDALMQPESRAAYRAL
VAQGWTDALRTRHPQGRVWTFWDYQAGAWQRDAGFRIDHLLLSPAAADRLVEAGVDRDYR
GREKASDHAPTWVRVK
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatcgtcagctacaatgtgaacggcatcaaggcgcgcctgccgcgcctgctggaa
tatctaaccgagcagcagcccgacatcgtctgccttcaggagctgaaatcgagcgacgac
actttcccggaggccgatatccgcgccgccggctatggcgcggtgtggcatggtcagaaa
ggcttcaacggcgtcgccgtgctggcgcgcgcggccgatccggtcgagcgccagcgcggg
ctggagggcgatcccgacgatgcgcacagccgctatctcgaatgcgatgtggacgggctg
gtgatcgcctcgatctatttgcccaacggcaatccgcagccggggccgaagttcgattac
aagctgcgctggatggagcggctggcggatcgcgcccgcgccttgctggcggaggaagtg
ccggcggtgctggcgggcgattataacgtcatcccgaacgacgacgacaccttctcggtc
cgcgcgatggccgacgacgcactgatgcagccggagagtcgagcggcctatcgcgcgctg
gtcgcgcagggttggaccgacgcattgcgcacccgccatccgcaggggcgcgtgtggacc
ttctgggactatcaggccggcgcgtggcagcgcgatgcgggcttccgcatcgaccatctg
ctgctcagccccgctgccgccgaccggctggtggaggcgggcgtcgaccgcgattatcgc
gggcgcgaaaaggccagcgatcacgcgccgacctgggtgcgggtcaaatag
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