KEGG   Sphingomonas sp. CL5.1: F9288_15975
Entry
F9288_15975       CDS       T11042                                 
Name
(Genbank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
spcl  Sphingomonas sp. CL5.1
Pathway
spcl02024  Quorum sensing
spcl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spcl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F9288_15975
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    F9288_15975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spcl03019]
    F9288_15975
   03036 Chromosome and associated proteins [BR:spcl03036]
    F9288_15975
Messenger RNA biogenesis [BR:spcl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     F9288_15975
Chromosome and associated proteins [BR:spcl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    F9288_15975
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: QKS00956
LinkDB
Position
complement(3298424..3298915)
AA seq 163 aa
MAEKQTSLQDLFLNALRRSKTPVTMFLVKGVKLQGIVTWFDNFSVLLRRDGQSQLIYKHA
ISTIMPGGHLDVETIVEQMGENGKKQPLLQEVFLNAVRKTHDPVTMFLVNGVMLQGNIAA
FDLFCMLLQRDGASQLVYKHAVSTIQPSRALNLAEEAAGSDED
NT seq 492 nt   +upstreamnt  +downstreamnt
atggccgaaaagcaaacctctcttcaggatctcttcctcaacgcgcttcgccgttcaaag
actcctgtcacgatgttcctcgtcaagggtgtgaagctccagggcatcgtcacctggttt
gacaatttctcggtgttgctgcgccgcgacggacaatcccaactgatctacaagcacgcc
atttccaccatcatgccgggcggtcacctcgacgtcgagacgatcgtcgagcagatgggc
gagaacgggaagaagcagccgctgttgcaggaagtgttcctcaacgcggtgcgcaagacg
cacgatccggtcaccatgttcctggtcaacggcgtgatgcttcagggcaatatcgccgcg
ttcgacctgttctgcatgctgttgcagcgcgatggtgcgtcgcagctcgtttacaaacat
gccgtttcgacgatccagccgtcgcgcgcgctcaatctggccgaagaagcggcgggttcg
gacgaggattga

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