Sphingomonas sp. CL5.1: F9288_16170
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Entry
F9288_16170 CDS
T11042
Symbol
addA
Name
(Genbank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
spcl Sphingomonas sp. CL5.1
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_16170 (addA)
Enzymes [BR:
spcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9288_16170 (addA)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
F9288_16170 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
QKS00988
LinkDB
All DBs
Position
complement(3339617..3343054)
Genome browser
AA seq
1145 aa
AA seq
DB search
MAVTADALAPLPPLRGEQRTASRPDSHVWLSASAGTGKTQVLAARVFRLLLRGVEPGAIL
CLTFTKAGAAEMAARVSQRLAAWVRAPETVLAKDLIALGEEPTPQRVARARTLFAKVLDA
PGGGLRIQTIHGFCQGLLAAFPAEAGLVPGFRPIEPREEALLMRQALADLLVDAEREGRD
GPAATIGALSVRLGEEKAEAFLRDCARAGRALEALPAGVGPYVRRALGLPAGDVEDTIRA
ACGDDAIDRRALETIAALNREWGTKNGVTRAEAIATWLALGAEQRAAALDDLHAVWARAD
GDPRSFGKGQAPQEPAYADLAMRLHGQCAELLSLRVRAAFADLLADALTVGRDYARGYAA
AKRRTGAVDFDDLIAATVDLFDQPGIGEWVRFKLDQITEHVLIDEAQDTNANQWRIVRAL
VDEYFVGRGVHAPSTRTLFTVGDHKQAIFGFQGTDPINFVAAERYFAGRADEVRGDDHMP
DEERGLAFEKLSLLASFRSTRPVLEFVDAAIGLIGHEALGMAESVPPHASEVPGPGVVEL
WPPVCAGAGEGDDGEEQWIDDAVRENAARIARQVRAWLDQGLMLESKGRALRPEDVMILV
KRRGELAQLLVARLYAEGVPVAGVDRLRLNAPLAVQDLLAAIRFVLQPEDDLSLAILLVS
PLIGWTQEELLDRAVPRSGSLWRHLSARHRDLLAPLDAMLARADFTTPYQFLEELLSGAL
DGRRKLLERLGEEARDPIEELLSAALDFETSATPSLQRFLDWFDRGEVEIVRDAAQPRDA
VRVMTAHGAKGLQAPLVILADATADPDAAMRSALMWAPPDLAAPLPVFRPRKDERAGEID
AVVAATDLRERQEHWRLFYVAATRAEERLVIAGSLSAKWQGVPPPESWYGLAAGTFDALG
VAGEGVRTFAGIAPPTAAKPRAATRAERFEAPAVPEWARRPAPQEQRPPRPLAPSSLGED
EVADPPPGPAMRASAERGRLIHALFERLPAVASPDRARAADRWLADVGQVADAAGRAAIV
EAALRVIDDPAHAALFGPDALAEAPVSAVLPDGMVVAGTVDRLLVTDTLVRIVDFKTARR
VPRSVDEVPPYHLRQMAAYAAALAVIFPGHRIEAALLYTGGPLLVPLSADLLAEHKPRYR
MAEQS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgaccgctgacgcgctcgcccccttgcccccgctgcgcggcgagcagcgcacc
gcgagccggccggacagccatgtgtggctctccgcctcggccggcacgggcaagacgcag
gtgctcgccgcgcgcgtcttccgcctgctgctgcgcggggtggagccgggggcgatcctg
tgcctcaccttcaccaaggcgggcgcggcggagatggcggcgcgcgtcagccagcggctc
gcggcgtgggtgcgcgcgccggagacggtgctggcgaaggacctgatcgcgctgggcgag
gagccgacgccgcagcgcgtcgcgcgcgcgcgcacgctgttcgccaaggtgctcgacgcg
ccgggcggcggcctgcgcatccagacgatccacggcttctgccaggggctgctcgcggcc
ttcccggccgaggccggtctggtgcccggcttccgcccgatcgagccgcgcgaggaggcg
ctgctgatgcggcaggcactcgccgacctgctggtcgatgccgagcgggaggggcgcgac
gggccggcggcgacgatcggcgcgctctccgtgagactgggcgaggagaaagcggaggcg
ttcctgcgcgattgcgcgcgcgcggggcgggcgctggaggcgctgccggccggggtcggt
ccttatgtgcggcgcgcgctcgggctgccggcgggcgatgtcgaggatacgatccgcgcg
gcctgcggtgacgacgcgatcgaccggcgcgcgctggagacgatcgccgcgctcaaccgc
gaatgggggacgaagaacggcgtcacgcgggcggaggcgatcgcgacatggctcgcgctc
ggcgcggagcagcgcgcagcggcgctggatgacctccacgccgtctgggccagggcggac
ggcgatccgcgctcgttcggcaaggggcaggcgccgcaggagccggcctatgccgatctc
gcgatgcggctgcacgggcaatgcgcggagctgctgtcgctgcgcgtgcgcgccgccttc
gccgacctgctcgccgacgcgctgacggtcgggcgcgattatgcgcgcggctatgcggcg
gcgaagcggcggaccggggcggtcgatttcgacgacctgatcgcggcgacggtcgatctg
ttcgatcagccggggatcggcgagtgggtgcgcttcaagctcgaccagatcaccgagcac
gtgctgatcgacgaggcgcaggacaccaatgcgaaccagtggcggatcgtgcgcgcgctg
gtcgacgaatatttcgtcgggcgcggcgtccatgccccttcgacgcgcaccttgttcacg
gtgggcgatcacaagcaggcgatcttcgggttccagggcaccgatccgatcaacttcgtc
gcggccgagcgctatttcgcgggccgggcggatgaggtgcgcggcgacgaccatatgccc
gacgaggaacgcgggctggcgttcgagaagctgtcgctgctcgcctcgttccgctccacg
cggccggtgctggagttcgtcgacgcggcgatcgggctgatcgggcatgaggcgctcggc
atggcggagtcggtgccgccgcacgccagcgaggtgccggggccgggcgtggtcgagcta
tggccgccggtctgcgccggggcgggcgagggcgacgacggcgaggaacaatggatcgac
gatgcggtgcgcgagaatgccgcccgcatcgcccggcaggtgcgcgcgtggctcgatcag
gggctgatgctggagagcaagggccgcgcgctgaggcccgaggacgtgatgatcctcgtc
aagcggcgcggcgagctggcgcaactgctcgtcgcgcggctctatgccgagggcgtgccg
gtggcgggcgtggaccggctgcggctcaatgcgccgctcgcggtgcaggatctgctcgcc
gcgatccgcttcgtgctgcaaccggaggatgacctgagcctcgccatcctgctcgtctcg
ccgctgatcggctggacgcaggaggaactgctcgaccgcgccgtgccgcgatcggggagc
ttgtggcggcacctgtcggcgcggcatcgcgacctgctcgcgccgctcgatgcgatgctg
gcgcgggcggatttcaccacgccctatcagttcctggaggaattgctgtcgggcgcgctc
gacgggcggcgcaaattgctcgaacggctgggcgaggaagcgcgcgatccgatcgaggaa
ttgctgtccgccgcgctcgatttcgagacgagcgcgacgccctcgctgcaacgcttcctc
gactggttcgatcgcggcgaggtggagatcgtgcgcgacgccgcccagccgcgcgacgcg
gtgcgggtgatgacggcgcacggcgcgaaggggcttcaggcgccgctggtgatcctcgcc
gacgccaccgccgacccggatgcggcgatgcgctcggcgctgatgtgggcgccgcccgat
ctcgccgcgccgctgcccgtgttccgcccgcgcaaggacgagcgcgccggcgagatcgac
gcggtggtcgccgcgaccgacctgcgcgagcggcaggagcattggcggttgttctatgtc
gccgcgacgcgcgccgaggaaaggctggtgatcgccggctcgctcagcgccaaatggcag
ggcgtgccgcctccggaaagctggtacggcctcgccgccggcaccttcgacgcgctcggc
gttgcgggggagggcgtgcggaccttcgccggcatcgccccgccgaccgccgcgaaaccg
cgcgccgcgacgcgggcggagcggttcgaggcgcccgccgtgccggaatgggcgcgccgg
cccgcaccccaggagcagcgcccgccgcgcccgctcgcgccgtcgtcgcttggcgaggac
gaggtggccgatccgccgccaggcccggcgatgcgcgcgtcggccgagcgcgggcggctg
atccatgccctgttcgagcggcttccggcggtcgcctcacccgatcgcgcgcgcgccgcc
gatcgctggctggccgatgtgggacaggtcgccgacgccgccgggcgcgcggcgatcgtc
gaggcggcgctgcgggtgatcgacgatccggcgcacgccgccttgttcgggccggatgcg
ctggccgaagcgccggtcagcgcggtgctgcccgacggcatggtcgtggcggggacggtg
gaccggctgctcgtcaccgacacgctcgttcgcatcgtcgatttcaagaccgcacggcgg
gtgccgcgcagcgtggacgaggtgccgccctatcacctgcggcagatggcggcctatgcc
gccgcgctcgcggtgatcttccccggccaccggatcgaggcggcgctgctgtataccggc
ggcccgttgctggtgccgctttccgccgacctgctggcggagcacaagccgcgctatcgc
atggcggagcaaagctag
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