Sphingomonas sp. CL5.1: F9288_16175
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Entry
F9288_16175 CDS
T11042
Name
(Genbank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spcl Sphingomonas sp. CL5.1
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_16175
Enzymes [BR:
spcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9288_16175
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
F9288_16175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QKS00989
UniProt:
A0A6N0X4C3
LinkDB
All DBs
Position
complement(3343038..3345950)
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AA seq
970 aa
AA seq
DB search
MAEGRRPRVYTIPAHRAFADALVAGLMRRHGGDPLGLARGLVLLPNNRAKIAITEAFVRA
SGGGLVLPRLVAIGADDLGEAIGAALDPADDAAPVPPAIAPLARRMILSRLVQEERGDLD
AAEAVRLAGELARTLDQLIVEEVPPSRLAELDLGPELSEHWQRALASFRVVLDRWPGELA
RLGRIDLAERRARLLSRLAERWGLNPPAGFVCAAGITDSAPAVARLLRSIAFLPQGMVVL
AGVDTAMPEEEWEALGPHPEDERRRAIEVHPQFHLKLLLERIGVARCEVATWRDGSDFDA
SAARGRAIANALAPADFTGKWTGLAAADRRLAGVRAAEFANPAGEAQAIALALRGALETE
GRTAALVTPDRALARRVAAHCKRWDIEIDDTAGRPLSILPPGTLLSAIAEAAAQDFAPLA
LLTLLKHPLVRAGEQRAAWLDGVRRLDRALRGPRPAPGLSGIDARMGEDRWWSEACAPLA
PIAAALGAADRPFAGRIAALREAAQALAGDEAWRGPAGRAAADLLAELEAEAAAGPRAVS
PDDLAPLIRLLMDEVAVRPAQGGHPRLAIYGLIEARLQSADLMILGGLNEGVWPGTPAPD
PWLAPRIRAALGLPGLDRRIGVAAHDFGQGLGAPDVLMTRARRDSRSPTLASRFWLRLEA
MAGKDFARAHDLESWVEALDRPVVYLPAPRPAPAPAKELRPREISVTQVDRLKADPFAFY
AQRILRLAALDPVDADPTAAWRGTAVHEVLEKWAREDGCAIEKLRPRALAMLDDPAAHPL
LRALWQPRLIAAIDWIANRLVQQRAAGREVLRVEEKGAAEIAGVRLSGKFDRIDRAGDGS
LVIVDYKTGKAPSPSAVAAGFSMQLGLLGAIAEAGGFEGIAGTAGGFEYWSLAKYRDEFG
QVTSPVDPAGKNGRIVTDEFVERARRAFTAAAEQWLTGDEPFVAKLHPEYAPYADYDQLM
RRDEWYGRDR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaggccggcggccgcgagtctacactatcccggcgcatcgggccttcgccgac
gcgctggtcgcggggctgatgcgacgtcatggcggcgacccgctggggctggcgcgcggg
ctggtgctgctgccgaacaaccgcgccaagatcgcgatcaccgaggcgttcgtgcgcgcg
tccggcggtgggctggtgctgccccggctggtggcgatcggcgcggatgatctgggtgag
gcgatcggcgccgcgctcgatccggccgacgacgcggcgcccgtgccgcccgccatcgcc
ccgctcgcgcggcggatgatcctgtcgcggctggtgcaggaggagcgtggcgacctcgac
gcggcggaggcggtgcggctggccggggagctggcgcggacgctggaccagctcatcgtc
gaggaggtgccgccgtcgcggttggccgagctggacctcggaccggaactgtcggaacat
tggcagcgcgcgctcgcctcgttccgcgtggtgctcgatcgctggccgggcgaactggcg
cggctcgggcggatcgaccttgccgagcggcgcgcgcggctgctgtcgcggctggcggag
cggtggggccttaatccgccggccgggttcgtctgcgcagcgggcatcaccgattccgcg
cccgccgtcgcgcggctgctgcgtagtatcgccttcttgccgcaaggcatggtggtgctg
gccggcgtcgataccgcgatgcccgaggaggaatgggaggcgctcggcccgcatccggaa
gacgagcggcgacgcgcgatcgaggtgcatccacaattccacctcaagctgctgctcgaa
cgcatcggcgtcgcgcgctgcgaggtggcgacatggcgcgacggcagcgatttcgacgca
tcggcggcgcgcgggcgagcgatcgccaatgcgctcgcgccggccgacttcaccggcaaa
tggaccgggctggcggcggccgaccggcggctggcaggcgtgcgcgcggcggaattcgcc
aatccggccggcgaggcgcaggcgattgcgctggcgctgcgcggcgcgctggagacggaa
gggcggacggcggcgctcgtcacgccggatcgcgcgctggcgcgccgggtggcggcgcat
tgcaaacgctgggatatcgagatcgacgataccgccgggcggccgctctcgatcctgccg
ccggggacgttgctgagtgcgatcgccgaggccgccgcgcaggatttcgcgccgctcgcc
ttgctcaccctgctcaagcatccgctggtgcgcgccggcgagcaacgcgcggcgtggctc
gacggggtgcggcggctcgaccgcgcgctgcgcgggccgcgacccgcgccggggctgtcc
ggcatcgacgcgcggatgggcgaggatcgctggtggagcgaggcgtgcgccccgctcgcg
ccgatcgcggcggcgctgggcgcggcggatcgcccgttcgcgggacgcatcgcggcgctg
cgcgaggcggcgcaggcgctggccggcgacgaggcgtggcgcggccccgcagggcgcgcg
gcggcggacctgctcgccgaacttgaagccgaagcggcggcagggccgcgcgcggtgtca
ccggacgatctcgcgccgctgatccggctgctgatggacgaggtggcggtgcgccctgcg
caaggcgggcatccgcgcctcgccatctacggcctgatcgaggcgcggttgcaatcggcg
gacctgatgatccttggcgggctgaacgagggcgtgtggccgggcacgccagcgcccgac
ccgtggctcgccccgcgcatccgcgccgcgctcggcctgccggggctggatcggcggatc
ggggtcgccgcgcatgacttcgggcaggggctgggcgcgccggacgtgctgatgacccgc
gcgcggcgcgacagccgctcgccgacgctcgcctcgcgcttctggctgcggctggaggcg
atggcggggaaggatttcgcccgcgcgcacgatctcgaaagctgggtcgaggcgctcgac
cggcccgtggtgtatctgcccgcgccgcgccccgcgcccgcgccggcgaaggaactgcgc
ccgcgcgagatttcggtgacgcaggtcgaccgcctgaaggccgatcccttcgccttctat
gcccagcgcatcctgcggctcgccgcgctcgatccggtcgatgccgatcccaccgccgcg
tggcgcggcacggcggtgcatgaggtgctggagaaatgggcgcgcgaggacggttgcgcg
atcgagaagctgcgcccgcgcgcgctggcgatgctcgacgatccggcggcgcatcccttg
ctccgcgccttgtggcagccccggctgatcgccgcgatcgactggatcgcgaaccgactc
gtccagcagcgcgcggccgggcgcgaggtgttgcgcgtcgaggagaagggcgcggcggag
atcgccggcgtcaggctttccggcaagttcgaccgcatcgaccgcgcgggcgatggcagc
ctcgtcatcgtcgattacaagaccggcaaggcgccgtcgccctcggcggtcgcggccggt
ttctcgatgcagctcggcctgctcggcgcgatcgcggaggccggcgggttcgagggaatc
gcggggacggccggcgggttcgaatattggtcgctggcgaaatatcgcgacgagttcggg
caggtcaccagcccggtcgatccggcggggaagaacgggcggatcgtgacggacgagttc
gtcgagcgcgcgcgccgggcgttcacggcggcggcggagcaatggctcaccggcgacgag
ccgttcgtcgccaagctccatcccgaatacgccccttatgccgattacgaccagttgatg
cggcgcgacgaatggtatggccgtgaccgctga
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