Sphingomonas sp. CL5.1: F9288_16470
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Entry
F9288_16470 CDS
T11042
Symbol
dnaE
Name
(Genbank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03030
DNA replication
spcl03430
Mismatch repair
spcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9288_16470 (dnaE)
03430 Mismatch repair
F9288_16470 (dnaE)
03440 Homologous recombination
F9288_16470 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spcl03032
]
F9288_16470 (dnaE)
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_16470 (dnaE)
Enzymes [BR:
spcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F9288_16470 (dnaE)
DNA replication proteins [BR:
spcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F9288_16470 (dnaE)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F9288_16470 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
COE1_HLH
Scaffold
Motif
Other DBs
NCBI-ProteinID:
QKS01042
UniProt:
A0A6N0WXB5
LinkDB
All DBs
Position
complement(3413021..3416521)
Genome browser
AA seq
1166 aa
AA seq
DB search
MLHSGFVPLRIFSSYTMLDGAIDPKAIAKRAAALGFPAAALTDRNGLYAAMAYSDAAFDA
GVQPIIGVMLGVARPDLPEGVAPVIDWLALYAQDATGYDNLCALVSMAHLDRPIEHAPHV
DFAGLEGRTDGLLALTAGGEGALARLYAEDQPARAAAYADRLQRLFPDRLYIEIVRRLNE
IEGAAEPHLLDLAYARNLPLVATNPCCFADQDFLDAHDAMLCIANSTYVESDDRPKSSPD
AWMKPAGEMRALFADLPEAIENTLVVARRCAVAAPKRKPILPSLAGDREGEAAMLRQDAS
AGLERRLERIEALGAVPAEPDWKEVYRKRLEFELDVIIQMGFPGYFLIVADFIKWAKERD
IPVGPGRGSGAGSVVAWSLTITDLDPIRLGLLFERFLNPERVSMPDFDIDFCETRRGEVI
RYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLDR
ALNGVSELAREYANENDVRRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLAQLVPLYRDPR
SDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKKAVEMLAKRGISVDLDALGWDDEETYE
LLQAGNTVGVFQVESEGMRRTLSAVKPTVFEDIIALGALYRPGPMDNIPMFGRRKNGQEE
IEYPHPLLEGILAETYGIFVYQEQVMQAAQVLAGYTLGGADLLRRAMGKKIKAEMDAQRA
IFVEGCAKTNDIPAAKANELFDLIDKFAGYGFNKSHAAAYALLTYQTAWLKAHYPHEFFA
ASMCYDIHLTDKLAVFVDDMRRLGIELLPPDINRSEAEFEVEVDDHGRPAVRYALAALKS
VGEGAMEKLVAEREERGRFASLDDLAHRVDPRLLNKRQLETLAAGGAFDAMEPNRAGVFA
MAETILAVAARTHEQRASGQGGLFGDASHAGDTIKLPRSVHWSMAQKMEQEKEAFGYYFS
AHPVDRHTHLAKMHGARQFAALVELSIPDDGTRAGATMAVLVEEARWRTSARGRRYLMAT
LSDPSGQFFSTCFDDQVSNDLEEAAKAGVCGLATVELDRRPGEDQPRVTIKRFQQFDSLA
STARFVAEITVGIIEAITPLAALLEGQRGARGEVRLKVRLPKGGEATLLLGRDFLLDAEL
IERAGLLPGVIGATLGRAETHLAAAS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgttgcattcagggttcgtgccgctccgcatcttctcctcatacacgatgctggacggc
gcgatcgatcccaaggcgatcgccaagcgcgcggcggcgctcggctttccggcggcggcg
ctcaccgatcgcaacggcctctacgccgccatggcctattcggacgcggcgttcgacgcg
ggggtgcagccgatcatcggcgtgatgctcggggtcgcccggcccgatctgcccgagggc
gtcgcgccggtcatcgactggctcgcgctctacgcgcaggatgcgaccggctacgacaat
ctctgcgccctggtcagcatggcgcacctcgatcggccgatcgagcacgcgccgcacgtc
gatttcgccgggctggaagggcggacggacgggctgctcgcgctcaccgcgggcggggag
ggcgcgctcgcccggctctatgccgaggatcagcccgcgcgcgccgcggcctatgccgat
cgcttgcagcggctgttccccgaccggctctatatcgagatcgtccgccgcctgaacgag
atcgagggcgccgccgagccgcatctgctcgacctcgcctatgcccggaatttgccgctg
gtggcgaccaatccgtgctgcttcgccgatcaggacttcctcgacgcgcatgacgcgatg
ctgtgcatcgccaattccacctatgtcgaaagcgacgatcgcccgaaaagctcgcccgat
gcgtggatgaagccggccggcgagatgcgcgcgctgttcgccgatctgcccgaggcgatc
gagaacacgctcgtcgtcgcgcggcgctgcgccgtcgccgcgccgaagcgcaagccgatc
ctccccagcctcgccggcgatcgcgagggcgaggcggcgatgctgcggcaggacgcgtcg
gccgggctggagcgccggctggagcggatcgaggcgctcggcgcggtgccggcggagccc
gactggaaggaagtctatcgcaagcggctggagttcgagctggacgtcatcatccagatg
ggcttccccggctatttcctgatcgtcgccgatttcatcaaatgggcgaaggagcgcgac
attccggtcgggccggggcgcggctcgggcgccggctcggtggtggcgtggtcgctgacg
atcaccgatctcgatccgatccggctggggctgctgttcgagcgcttcctgaacccggaa
cgtgtctcgatgccggatttcgacatcgacttctgcgaaacgcggcgcggcgaggtgatc
cgctacgtgcaggagaaatacggccgcgatcaggtggcgcagatcatcaccttcggaaag
ctcaaggcgcgcgccgtgctcaaggacaccggccgcgtgctccagatgagctacggccag
gtcgatcgcctcgccaagctcgtgcccaaccatccgaccgatccgtggacgctcgatcgc
gcgctcaatggcgtgagcgagctggcgcgcgaatatgccaacgagaacgacgtccgccgc
ctgctcgatctggcgatgaagctggaggggctgccgcgccactcctccacccatgcggcg
ggcgtggtgatcggggaccggccgctggcgcaactcgtgccgctctatcgcgatccgcga
tcggacatgccggtcacgcagttcgacatgaaatatgtcgagggcgccgggctggtgaag
ttcgacttcctcggcctcaagacgctttccgtgctcaagaaggcggtggagatgctggcc
aagcgcggcatctcggtcgacctcgacgcgctcggctgggacgacgaggagacctacgag
ctgctccaggccggcaacaccgtcggcgtgttccaggtggaatcggaggggatgcggcgc
acgctctccgccgtgaagcccacggtgttcgaggatatcatcgcgctcggcgcgctctat
cgccccggcccgatggacaatatcccgatgttcgggcgccgcaagaacgggcaggaggag
atcgaatatccgcatcccctgctggagggcatccttgcggaaacctacggcatcttcgtc
tatcaggagcaggtgatgcaggcggcgcaggtgctcgccggctacacgctcggcggcgcc
gacctgctgcgccgcgcgatgggcaagaagatcaaggcggagatggacgcgcagcgcgcg
atcttcgtcgagggttgcgcgaagaccaacgatatccccgccgccaaggccaacgagctg
ttcgacctgatcgacaagttcgccggctacggcttcaacaagagccacgcggcggcctat
gccctgctcacctaccagacggcgtggctgaaggcgcattatccgcacgaattcttcgcc
gcctcgatgtgctacgacatccatctcaccgacaagctcgcggtgttcgtggacgacatg
cgccgcctggggatcgagctgctgccgcccgacatcaaccgcagcgaggcggagttcgag
gtggaggtggacgatcacggcaggcccgccgtccgctatgcgctcgccgcgctgaagtcg
gtcggcgagggcgcgatggagaaactggtcgccgagcgcgaggagcgcgggcgcttcgcc
agcctcgacgatctcgcccaccgtgtcgatccgcgcctgctcaacaagcgccagctcgag
acgctggcggcggggggcgcgttcgatgcgatggagccgaaccgcgcgggcgtgttcgcg
atggccgagacgatcctcgccgtcgccgcgcgcacccatgagcagcgcgccagcgggcag
ggcgggctgttcggcgacgccagccacgccggcgacacgatcaagctgccccgctcggtc
cactggagcatggcgcagaagatggagcaggagaaggaagctttcggctattacttctcc
gcccacccagtcgaccgccacacccatcttgcgaagatgcacggcgcgcggcagttcgcc
gcgctggtggagctttccattcccgacgacggcacccgcgcgggggcgacgatggcggtg
ctggtcgaggaagcgcgctggcgcacatcggcgcggggccgccgctatctgatggctaca
ctgtcggacccgagcgggcaattcttctcgacttgcttcgacgatcaggtttcgaatgat
ctggaggaagccgccaaggccggcgtgtgcggccttgcgacggtggaactggaccggcgc
cccggcgaggatcagccacgcgtcacgatcaagcgtttccagcaattcgattctttggct
tccaccgcgcgtttcgtcgctgagatcacggtcggtattatcgaggcgatcacgccgctg
gcggcgctgcttgaggggcagcgcggcgcgcgcggcgaggtgcggctgaaggtacggctc
ccgaagggcggcgaggcgaccttgctgcttggccgtgacttcctgcttgacgcggagttg
atcgagcgcgcgggtctgttgcccggggtgatcggcgcgacgctcggccgcgcggaaacc
catctcgcggcggcgagctga
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integrated database retrieval system
