Sphingomonas sp. CL5.1: F9288_18140
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Entry
F9288_18140 CDS
T11042
Symbol
topA
Name
(Genbank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spcl Sphingomonas sp. CL5.1
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spcl03032
]
F9288_18140 (topA)
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_18140 (topA)
Enzymes [BR:
spcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F9288_18140 (topA)
DNA replication proteins [BR:
spcl03032
]
Prokaryotic type
DNA Topoisomerases
F9288_18140 (topA)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F9288_18140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Motif
Other DBs
NCBI-ProteinID:
QKS01335
UniProt:
A0A6N0X1S2
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All DBs
Position
3770630..3773149
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AA seq
839 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGADYRVLASYGHVRDLPPKDGSVDPDDGFAMEWENYADKAR
QLKAIADEAKKADRLILATDPDREGEAISWHVREVLRSRKALPDKVERVTFNAITKPAVT
AAMAAPRDLDTDLIDAYKARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE
REIEAFRSQEYWSVTAAMEQDGTQFAARLVQWEGKKLDRLSIGDEGTASRAKADVEAGRF
TVQSVETKPATRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYEDGAITYMRTDGVQ
MDGSAISAARKAVADRYDASYVPDKPRQYQTKAKNAQEAHEAIRPTDFSRDRAGSGDHAR
LYELIWKRALASQMASARMERTTVELADGTGRHILRATGQVVLFPGYLALYEEGVDDAEG
DDARRLPRMREGDAPAKKAVEAEQHFTQPPPRFSEASLVKRMEELGIGRPSTYASIIQTL
KDRSYVHIEKNRFFAEESGRLVTAFLERFFERYVGYDYTAELEEELDDVSGGRAQWQAVL
EAFWRDFKPRTTEVMEQKPSDITAALDQFLAPFLFPERADGGDPRACPNCGDGKLALRGG
RFGAFIACSNYPECKYTRRFAQPGGENGESTGPESLGRDPETGLEVERKSGRFGPYIQLG
EGKEAKRASIPKDIGELDLEWALKLLSLPRTIGDHPGTGKPITASIGRYGPYLAHDGKYA
RLQSTAEVFETGMNAAVVKLAEAAAGGGRPQRGASREPLKVLGPHPRTEVEIRLMEGRYG
PYVTDGTTNATMPKTIAPDQLTLEEAAQLIDARATAPAKGKKKAAPKKKAAAKKPAAKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgtcgaatcgccggccaaggcgaaaaccatcgagaaatatctcggc
gccgattatcgcgtcctcgcgagctacggccatgtccgcgatctgccgccgaaggacgga
tcggtcgatcccgacgacggcttcgcgatggaatgggagaattacgccgacaaggccagg
cagctaaaggcgatcgcggacgaggcgaagaaggccgatcgcctgatcctcgccaccgac
cccgatcgcgagggtgaggcgatctcatggcacgtccgcgaggtgctgcgcagccgcaag
gcgctgccggacaaggtggagcgcgtcaccttcaacgcgatcaccaagcccgccgtgacg
gcggcgatggccgcgccgcgcgatctcgataccgatctgatcgacgcctataaggcgcgg
cgcgcgctcgattatctggtcggcttcacgctctctccagtgctgtggcgcaagctgccg
ggagcgaaatcggcggggcgcgtgcaatcggtcgcgctcaggctgatcgtcgatcgcgag
cgcgagatcgaggcgttcaggtcgcaggaatattggtccgtcaccgcggcgatggagcag
gacggcacgcaattcgccgcccgcctcgtccagtgggagggcaagaagctcgatcgcctg
tcgatcggcgacgagggtaccgcgagccgcgccaaggccgatgtcgaggccgggcgcttc
accgtccagtcggtcgagacgaagcccgcgacgcgcaacccgccgccgcccttcaccacc
tcgacgctccagcaggaagcggcacgcaagctcggcttctccgccagccacaccatgcgg
atcgcgcaggcgctctacgaggacggcgcgatcacctatatgcggacggacggcgtgcag
atggacggctccgccatctcggcggcgcgcaaggcggtcgccgaccgttacgacgccagc
tatgtgccggacaagccgcgccagtatcagaccaaggcgaagaacgcgcaggaagcgcac
gaggcgatccgtccgaccgatttctcgcgcgatcgcgcgggctcgggcgaccacgcccgc
ctctacgagctgatctggaagcgcgcgctggcgagccagatggcatccgcgcggatggag
cgcaccaccgtcgagctggcggacggcaccggccgccacatcctgcgcgcgaccggacaa
gtcgtcctgttccccggctatctcgcgctctacgaggagggcgtggacgatgccgagggc
gacgacgcccgccgcctaccccggatgcgcgagggcgatgcgccggcgaagaaggcggtc
gaggccgaacagcatttcacccagccgccgccgcgcttctccgaagcgtcgctggtcaag
cgcatggaggaactgggcatcggccgcccctccacctacgcatcgatcatccagacgctt
aaggaccgctcctacgtccacatcgagaagaatcgcttcttcgcggaggagagcgggcgc
ctggtgacggccttcctcgaacgctttttcgagcgttacgtgggctatgattacactgcc
gagctggaggaggagctggacgacgtatccggcggccgcgcgcaatggcaggcggtgctg
gaggcgttctggcgcgatttcaagccgcgcacgaccgaggtgatggagcagaagccctcc
gacatcaccgccgcgctcgaccagttcctcgcacccttcctgttcccggagcgggcggac
ggcggtgatccgcgcgcatgccccaattgcggcgacggcaagcttgcccttcgaggtggc
cggttcggcgcgttcatcgcctgctccaattatccggaatgcaaatacacccgccgcttc
gcccagccgggcggcgagaacggcgaaagcaccggcccggaatcgctcggccgcgatccg
gagaccgggctggaggtggagcgcaagtccgggcgcttcggcccctatatacagctcggc
gagggcaaggaggcgaagcgcgcctcgatccccaaggatatcggcgagctcgatctcgaa
tgggcgctcaagctgctcagcctgccgcgcacgatcggcgatcacccgggaacgggcaag
ccgatcaccgcttcgatcggacgttacgggccatatctggcacatgatggcaaatatgcc
cggctccagtccaccgccgaggtgttcgagacggggatgaacgccgccgtggtgaaactg
gcggaggcggcggccggcggcggtcgtccgcagcgcggcgcgagcagggagccgctcaag
gtgctcggcccgcatccgcgtaccgaggttgagatcaggctgatggaggggcgttacggc
ccttacgtcaccgacggcaccaccaacgccacgatgcccaagacgatcgccccggaccag
ctcacgctggaagaagccgcgcaactgatcgacgcccgcgcgacagctccggcaaaggga
aagaagaaagccgcgccgaagaaaaaggcggccgcgaagaaaccggcggcgaagaagtag
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