KEGG   Sphingomonas sp. CL5.1: F9288_18510
Entry
F9288_18510       CDS       T11042                                 
Symbol
ligD
Name
(Genbank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spcl  Sphingomonas sp. CL5.1
Pathway
spcl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spcl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F9288_18510 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spcl03400]
    F9288_18510 (ligD)
Enzymes [BR:spcl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F9288_18510 (ligD)
DNA repair and recombination proteins [BR:spcl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F9288_18510 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QKS01393
UniProt: A0A6N0X046
LinkDB
Position
3852549..3854993
AA seq 814 aa
MATRDDPLETYNRKRDFSKTREPKGERGTRGGNLFIVQKHDATRLHWDFRLEMDGVLKSW
AVTRGPSLDPEDKRLAVRTEDHPMSYARFEGTIPKGEYGGGTVMLWDEGTWEPVGGKDPA
KTIKQGHLHFILHGQRMKGEWLLVRMKGKPGERHENWLLRKVEDAHAGASGDLVDKALTS
VSSGRTMLEIAGGKDAPPEKKGKSRRKGKLPAFRDVQLATLVDHVPAGSGWLHEVKYDGY
RALIAVSGAEARAYTRHGLDWSDRFAPIVEAFAGLGIGAALVDGEVVAFDGEGRPSFSAL
QNALKHGGELHYFAFDLLEQDSEDLTKLGNAERKERLAALLGGARPPIHYAEHLSSGGEE
LFARLCREGYEGVVSKRAAAPYRGTRTRDWLKVKCTRRQEFVIIGHIESDRPGRDLRSLA
LGLYDGAALRYAGRVGTGFDADTREMLLAKLKPLARKTAPTDVPRAAARGVKWVDPVLVA
EVAFAEFTADHVVRHASFLGLREDKEAREVVPESPAAAPGDDPPGKAPFGVTITHPERVI
YPGTGVTKGDLAAYYARLAEPMLQWLAGRPVSLVRCPQGRAKQCFFQKHDSGAFGDKVDH
VPIREKDGDVEDYIVVNHGAGLLTCVQMNTIEFHGWGAKASDVEHPDRMVFDLDPEEGLD
FAEVRRAAVQLRDLLGEMGLASFPMATGGKGVHVIVPLDATADWPTVKDFASRFARAVAE
AHPRRFTANMRKAERRDRIFLDWLRNERAATAVLPYSARAREIASVAAPITWRELETLEN
ARPFTIADAAHLLERAQGRDLRDWCVAAQHLPDV
NT seq 2445 nt   +upstreamnt  +downstreamnt
atggcgacgcgcgacgatccgctcgaaacatacaatcgcaagcgcgatttctcgaaaacc
cgcgagccgaagggggagcgcggcacgcggggcggcaacctgttcatcgtccagaagcat
gacgcgacgcggctccactgggatttccggctggagatggacggcgtgctgaaaagctgg
gcggtgacgcgcgggccgagcctcgatcccgaggacaagcgcctcgcggtgcgcaccgag
gatcacccgatgtcctatgcccggttcgagggcacgatcccgaagggcgaatatggcggc
ggcaccgtcatgctgtgggacgaggggacgtgggagccggtcggcggcaaggacccggcg
aagacgatcaagcagggccacctccatttcatcctccacgggcagcggatgaagggcgaa
tggctgctggtgcggatgaagggcaagccgggcgaacgccatgagaactggctgctccgc
aaggtggaggacgcccatgccggcgcatcgggcgatctggtcgacaaggcgctgaccagc
gtctccagcgggcggacgatgctggagatcgccggggggaaggacgctcccccggagaag
aagggcaagagccgccggaagggcaagctgcccgcgttccgcgatgtgcagctcgccacg
ctggtcgatcatgtcccggccggatcgggctggctgcacgaggtgaaatatgacggctat
cgcgcgctgatcgccgtctccggcgcggaagcgcgcgcctatacccggcacgggctggac
tggtcggaccggttcgcgccgatcgttgaggccttcgccggactcggcatcggcgccgcg
ctggtcgacggcgaggtggtggcgttcgacggcgaggggcggcccagcttctccgcgctg
caaaacgcgctgaagcacggcggcgagctgcattatttcgccttcgacctgctggagcag
gacagcgaggacctgacgaagctgggcaatgcggagcgcaaggaacggctcgccgcgctg
ctcgggggcgcccgcccgccgatccattatgccgagcatctctcctccggcggggaggaa
ttgttcgcccggctgtgccgcgagggatatgagggcgtcgtctccaagcgcgccgccgcg
ccctatcgcggcacgcgcacgcgcgactggctgaaggtgaaatgcacccggcggcaggag
ttcgtcatcatcggccatatcgagagcgaccggccggggcgcgacctgcgcagcctcgcg
ctcggtctctatgacggcgcggcgctgcgctacgccgggcgggtcggcaccggcttcgac
gccgacacgcgcgagatgctgctggcgaagctgaagccgctcgcgcgcaagaccgcgccg
accgacgtgccgcgcgccgccgcgcgcggggtgaaatgggtcgatccggtgctggtggcg
gaggtcgccttcgccgaattcaccgccgatcatgtcgtccgccacgccagcttcctcggg
ctgcgcgaggacaaggaggcgcgcgaggtggtgccggaaagccccgccgccgctcccggc
gacgatccgcccggcaaggcgcccttcggcgtcaccatcacccacccggagcgcgtgatc
tatcccggcaccggcgtcaccaagggcgacctcgcggcctattacgcccgccttgccgag
ccgatgctgcaatggctggcgggccgcccggtcagccttgtccgctgcccgcaggggcgc
gcgaagcaatgtttcttccagaagcacgattccggcgcgttcggcgacaaggtcgatcac
gtcccgatccgcgagaaggacggcgacgtggaggattatatcgtggtgaaccacggcgcg
gggctgctcacctgcgtgcagatgaacacgatcgagttccacggctggggggcgaaggcg
agcgacgtcgagcatcccgaccgcatggtgttcgatctcgatcccgaggaggggctggac
ttcgccgaggtgcgccgcgcggcggtgcagctccgcgacctgctcggcgagatggggctg
gcgagcttcccgatggcgaccggcggcaagggcgtccacgtcatcgtcccgctggacgcc
accgccgactggccgaccgtgaaggacttcgccagccgcttcgcccgcgccgtggccgag
gcgcaccccaggcgcttcaccgccaacatgcgcaaggcggaacggcgagatcggatattc
ctcgactggctacgcaacgaacgcgccgcgaccgccgtcctcccctattccgcccgcgcg
cgggagatcgccagcgtcgccgcgccgatcacctggcgcgagctggagacgctggaaaac
gcccgccccttcaccatcgccgacgccgcccatctcttggagcgcgcgcagggccgcgac
ctgcgcgattggtgcgtcgcggcgcagcaccttcccgacgtatag

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