Sphingomonas sp. CL5.1: F9288_19190
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Entry
F9288_19190 CDS
T11042
Name
(Genbank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
spcl Sphingomonas sp. CL5.1
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spcl03032
]
F9288_19190
03036 Chromosome and associated proteins [BR:
spcl03036
]
F9288_19190
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_19190
DNA replication proteins [BR:
spcl03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
F9288_19190
Chromosome and associated proteins [BR:
spcl03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
F9288_19190
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
F9288_19190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
DUF4325
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
QKS01512
LinkDB
All DBs
Position
3994923..3995204
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AA seq
93 aa
AA seq
DB search
MIRSELVQQLAEANPELSLREVEAIVSTFFDEIVRRLAENGRVELRGFGAFSTRARDARS
GRNPRTGETVDVNAKRVPYFKPGKEMRARLNVA
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgatccgttccgaactcgtccagcaactcgccgaagccaatcccgagctttcgctgcgt
gaggtcgaagcgatcgtttccaccttcttcgacgagatcgtccgccgcctggccgaaaac
ggccgggtcgagctgcgcggtttcggcgctttctccacccgcgcccgcgacgcccgctcc
ggccgcaatccgcgcaccggcgagacggtggacgtgaatgccaagcgcgtcccctatttc
aagccgggcaaggaaatgcgcgcgcggctcaacgtcgcttga
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