Sphingomonas sp. CL5.1: F9288_19220
Help
Entry
F9288_19220 CDS
T11042
Symbol
rimO
Name
(Genbank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spcl Sphingomonas sp. CL5.1
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spcl03009
]
F9288_19220 (rimO)
Enzymes [BR:
spcl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
F9288_19220 (rimO)
Ribosome biogenesis [BR:
spcl03009
]
Prokaryotic type
ribosomal protein modification factors
F9288_19220 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
TRAM
Motif
Other DBs
NCBI-ProteinID:
QKS01516
UniProt:
A0A6N0X3T5
LinkDB
All DBs
Position
3998971..4000305
Genome browser
AA seq
444 aa
AA seq
DB search
MATKLPSPPRVGMVSLGCPKNLVDSERILTQLRADGYQMSADYAGADVVLVNTCGFLDSA
KEESLEAIGEAIAENGRVIVTGCMGKEAELIRARFPDVLAVTGAHQYEQVVEAVHDAAPA
NISPYVDLIPDAGLKLTPRHYSYLKISEGCNHRCAFCIIPSLRGDLVSRRPDAILREAEK
LVAAGTKELLVISQDTSAYGVDLRHKAWPWKGGEVRSHMTDLARELGRIAPWVRLHYVYP
YPHVDQVIPLMAEGLVLPYLDIPFQHASRAVLKAMKRPANEAKVLERIRSWREICPDIAI
RSTFVVGFPGETEDDFRYLLDWLDEAQLDRVGAFRFEPVEGAAANALPDPVPDEVKEERY
ARVMEKTAAISAAKLAAKVGLTLDVIIDMVGEEGGATGRSYADAPEIDGEVHLRDAGHLS
PGDIVRVAIEDADEHDLFGAPSDA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaactcccctccccgccccgcgtgggcatggtctcgctcggctgcccgaag
aaccttgtcgacagcgagcgcatcctgacccagctccgcgccgacggctaccagatgtcg
gccgactatgccggggcggatgtcgtgctggtcaacacctgcggcttcctcgattcggcg
aaggaggaaagcctggaggcgatcggcgaggcgatcgcggagaacgggcgcgtcatcgtc
accggctgcatgggcaaggaagcggagctgatccgcgcgcgcttccccgacgtgctcgcc
gtcaccggcgcgcatcaatacgagcaggtggtggaggcggtgcatgacgccgcgcccgcc
aatatctcgccctatgtcgatctgatccccgacgccgggctgaagctcaccccgcgccac
tacagctacctcaagatttcggagggctgcaatcatcgctgcgccttctgcatcatccct
tcgctgcgcggcgatctggtcagccgccgcccggatgcgatcctgcgcgaggcggagaaa
ctggtcgcggccgggacgaaggaactgctggtcatcagtcaggacacctccgcctacggg
gtggacctgcgccacaaggcttggccatggaagggcggtgaggtgcgctcgcacatgacc
gacctcgcgcgcgagctgggccggatcgcgccgtgggtgcggctgcactacgtctatccc
tatccgcacgtcgatcaggtgatcccgctgatggcggaagggctggtgctgccctatctc
gacatccccttccagcacgccagccgcgcggtgctgaaggcgatgaagcgtcccgccaac
gaggcgaaggtgctggagcgcatccgctcgtggcgcgagatctgccccgatatcgcgatc
cgctcgaccttcgtggtcggcttccccggcgagacggaggacgatttccgctacctgctc
gactggctggacgaggcgcagctcgaccgcgtcggcgcgttccgtttcgagccggtggaa
ggtgcggcggccaatgcgcttcccgatccggtgccggatgaggtgaaggaggaacgctac
gcccgcgtgatggaaaagaccgccgccatctccgccgcgaagcttgccgcgaaggtgggg
ctcacgctggacgtcatcatcgacatggtgggcgaggaaggcggcgcgaccggccgctcc
tatgcggatgcgccggaaatcgatggcgaggtgcatctgcgcgacgcgggtcatctgtcg
cccggcgatatcgtgcgggtggcgatcgaggacgccgacgagcacgatctgttcggcgcg
ccgtccgacgcctga
DBGET
integrated database retrieval system
