Sphingomonas sp. CL5.1: F9288_19570
Help
Entry
F9288_19570 CDS
T11042
Name
(Genbank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9288_19570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spcl03019
]
F9288_19570
03009 Ribosome biogenesis [BR:
spcl03009
]
F9288_19570
Enzymes [BR:
spcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F9288_19570
Messenger RNA biogenesis [BR:
spcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9288_19570
Ribosome biogenesis [BR:
spcl03009
]
Prokaryotic type
rRNA processing factors
F9288_19570
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
QKS02267
LinkDB
All DBs
Position
4079790..4082321
Genome browser
AA seq
843 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAALRAEQEAAEEADEPADDDIERF
EDDGGMDPDVAEELEGENEGARPRRSSVNDDQVEALRQRRMNLRRRYKIQDVIRRRQVLL
VQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAGDRKRLKTIMAELKL
PPSMGCIVRTAGLQRTKTEIKRDFDYLARLWDGIREQTLASSAPALIYGDSDLIKRAIRD
IYNKDIDEVIVEGDEGYRQAKDFMKLLMPSHAKRVKHYSDPIPLFQRSHVEDQLAAMYHP
VVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQLRLRDMAG
LVVIDFIDMDNNSNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEAST
RACPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSILTLRASQEAAFYVLNRKRADIAE
IEDRYGVRVEILPDGEQEGARMSVEAAGPPPAYAPKFDAPVEEIEDDIPEDIEDEIDEEE
EEAEEHRDDRPRDDGEREGNGRRRRRRRGRRGRGRPEGEGVEGAAHDEDEGEAEAAEQPE
AVEAADEGEGGRRRSRRGRRGRGRSREETGVTAEEATQEAPVAEAPAAPEPIEAEAEAEV
APKTRRRPRARAAKAETPAIEAPAPVEAAEEAAPKPKRGRRKKAEVEAEAAAAPAEPAPV
AEAAEAPAKPKRTRRKKVEAIAETAATGEASDANTDAEDEAPEAANDAPGGPRRGWWQRT
FGA
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaggaaacccgcgtggcggtcgtcaagggaaaccgg
atcgaggaatttgatttcgagagtgccgagcgcaagcagctcaagggcaatatctatctc
gccaaggtgacgcgcgtcgagccgtcgttgcaggcggcgttcgtcgattacggcggcaat
cgtcacggcttcctcgccttcagcgaaatccatccggattactaccagatccccaaggag
gatcgcgacgcgctgctgcgcgaggaggcggaacacgccgccgaggaagccgcgctgcgc
gccgagcaggaagccgccgaggaggcggatgaaccggccgacgacgatatcgagcggttc
gaggacgacggcggcatggaccccgacgtcgccgaggagcttgagggcgagaacgagggc
gcgcgcccgcgccgctcgtccgtcaacgacgatcaggtggaggcgctgcgccagcgccgc
atgaacctcaggcgccgctacaagatccaggacgtgatccgccgccggcaggtgctgctg
gtgcaggtcgtcaaggaggagcgcggcaacaagggcgcggcgctgaccacttatctcagc
ctcgccggccgctattgcgtgctgatgcccaacacgtcgcatggcggcggcatctcgcgg
aagatcagcaacgcgggggaccgcaagcggctgaagacgatcatggcggagctgaagctg
ccgccgtcgatgggctgcatcgtgcgcaccgccggtctccagcgcaccaagaccgagatc
aagcgcgacttcgattatctcgcccggctgtgggacgggattcgcgagcagacgctcgcc
tcctccgcgccggcgctgatctatggcgacagcgacctcatcaagcgcgcgatccgcgat
atctacaacaaggatatcgacgaggtgatcgtcgagggcgacgagggctatcgtcaggcc
aaggacttcatgaagctgctgatgcccagccacgccaagcgcgtgaagcattacagcgac
ccgatcccgctgttccagcgcagccatgtcgaggaccagctcgccgcgatgtatcatccg
gtggtgcagctcaagtcgggcggctatctggtcatcaacccgaccgaggcgctcgtctcg
atcgacatcaactcgggccgctcgacgcgcgagcataatatagagcagaccgccaccgcg
accaacctggaagccgcgcacgagatcgcccgccagctccgcctgcgcgacatggctggc
ctcgtcgtgatcgacttcatcgacatggacaacaattccaatgtccggaaggtcgagaag
gcgatgaaggaggcgctgaagaacgatcgcgcccgcatccaggtcggccgcatctcctcc
ttcgggctgatggagatgagccgccagcggctgcgcaccggcgtgctggaggcgtcaacc
cgcgcctgcccgcattgcgagggtaccggcctcgtccgcaccgcctcgtcggcgggcctc
tcggcgctccggctgatcgaggacgaggcggcgcgcgggcgcggctcgatcctcacgctg
cgcgccagccaggaggcggccttctacgttctcaaccgcaagcgcgccgacatcgccgag
atcgaggatcgctacggcgtgcgcgtcgaaatcctgccggacggcgagcaggaaggcgcg
cgcatgtcggtcgaggcggcggggccgccgccggcctatgcgccgaagttcgacgccccg
gtggaggagatcgaggacgatatccccgaggatatcgaggacgagatcgacgaggaggaa
gaagaagccgaggagcatcgcgacgaccgtccgcgcgacgacggcgagcgcgagggcaat
ggccgccgccgccgccgtcgtcgcgggcggcgcggtcgcggccgccccgagggcgagggc
gtcgagggcgcggcccatgatgaggacgagggcgaggcggaagccgccgagcagcccgag
gctgtcgaagcggcggacgaaggcgaaggcggacgccgccgcagccgtcgcggccgccgt
ggtcgtggccgcagccgcgaggaaaccggcgtgacggccgaggaagcgacccaggaagcc
ccggtggccgaggcccccgcggcgccggagccgatcgaggctgaggccgaagccgaggtc
gcgcccaagacgcgccgccgtccgcgcgcccgcgccgccaaggccgagacgccggcgatc
gaggccccggccccggtcgaggcggctgaagaagccgcgccgaagccgaagcgcggccgc
cgcaagaaggcggaggtggaggctgaagccgccgccgcgccggccgagcctgctcccgtc
gccgaagcggccgaagcgccggccaagccgaagcgcacccgccgcaagaaggtcgaggcc
atcgccgagaccgcggcgacgggggaagcgtccgacgccaacaccgacgccgaggacgaa
gcgccggaagccgcgaacgacgctcccggcgggccgcgccgcggctggtggcaacggacg
ttcggcgcctga
DBGET
integrated database retrieval system
