Sphingomonas sp. CL5.1: F9288_19620
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Entry
F9288_19620 CDS
T11042
Name
(Genbank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9288_19620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spcl03019
]
F9288_19620
03016 Transfer RNA biogenesis [BR:
spcl03016
]
F9288_19620
Enzymes [BR:
spcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F9288_19620
Messenger RNA biogenesis [BR:
spcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9288_19620
Transfer RNA biogenesis [BR:
spcl03016
]
Prokaryotic type
tRNA degradation factors
F9288_19620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
PF0610-like_N
LexA_DNA_bind
WHD_RNase_R
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
QKS01581
LinkDB
All DBs
Position
complement(4092408..4094609)
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AA seq
733 aa
AA seq
DB search
MRKPKAGLPTRQQIMDFIAESDHPAGKREIARAFGLTAQEKIALKALLKDMADEGLIDSA
PGRAFHKMGGVPKVTVLRVADVDDGGNVWAVPERWEAETPPPRLRVRERKRGALAIGARI
LARTEEAGGGWIAHPMKALAPSSEQMIGVLRGEGDRLWLQGVEKKERREFPVSEAGGAEA
GDLVLAERAGRPPRITARVVQRLGDPFAPRSFSLIAIHQFGIPDRFSEGALEEAERVARQ
PLGDGREDLTHLPIVAIDPADARDHDDAVWAAPDDDPANAGGWQAIVAIADVSFYARPGS
ALDRDARGRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAALACHLQVTKGGALKSWRF
TRATVRIAANIAYEDAQATIDAGAGPMLEALRPLWGCWQALAAARDQREPLNLDLPERRV
VLDEKGRIMSVAPRERLDAHRLIEDYMIAANVAAARALEAKKAPVMYRVHEPPAREKLVA
LKDYLDTFGISFALGQVIRPATFNRIIDKVGEADFRPQIMEQVLRTQTQAYYAPGNHGHF
GLALGSYAHFTSPIRRYADLMVHRALVSAYALGPGGLAGDEDFERIGEAISGLERRAMEA
ERDTIDRYVAAYLAERVGELVEARITGVVNFGFFATVEGVGGDGLMPVRDLGGEYFRFDE
ASRRLVGETSGEEYVLGQHLRLRLAEANPVSGALRFELPEGKGALPPPRRDGPRRGIKRR
GRPANIRHQGRRK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaaccaaaggccggcctgccgacccgccagcagatcatggacttcatcgccgag
agcgatcacccggcgggcaagcgcgagatcgcgcgcgccttcggcctgaccgcgcaggag
aagatcgcgctcaaggccctgctcaaggacatggccgatgaggggctgatcgattccgcg
cccggccgcgccttccacaagatgggcggcgtgcccaaggtgacggtgctgcgcgtcgcc
gacgtggacgatggcggcaacgtctgggcggtgccggagcggtgggaggcggagacgccg
ccgccgcgcctcagggtgcgcgagcgcaagcgcggcgcgctggcgatcggcgcgcgcatc
ctcgcgcggaccgaggaggccggcggtgggtggatcgcgcatccgatgaaggcactagcg
ccctcgtcggagcagatgatcggcgtgctgcgcggggagggcgaccggctgtggctgcaa
ggcgtggagaagaaggagcggcgcgagttccccgtctccgaggccggcggcgcggaggcg
ggcgatctcgtgctggccgagcgcgccgggcggccgccgcgcattaccgcgcgcgtggtg
cagcggctcggcgatcccttcgccccgcgcagtttctcgctgatcgcgatccaccagttc
ggcatcccggatcgcttctccgagggcgcgctggaggaggcggagcgcgtcgcgcgccag
ccgctcggcgacgggcgcgaggacctcacccacctgccgatcgtcgcgatcgaccccgcc
gatgcgcgcgaccatgacgatgcggtatgggccgcgccggatgacgaccccgccaacgcg
ggcgggtggcaggcgatcgtcgcgatcgcggacgtcagcttctacgcccgccccggctcg
gcgctggaccgtgatgcgcgcgggcggggcaattcggtctatttccccgatcgcgtcgtg
ccgatgctgccggaggtgctgtcggccgatgtctgctcgctgaaagagggcgaggatcgc
gcggcgctcgcctgccatctccaggtgacgaaaggcggggcgctcaaatcgtggcgcttc
acccgcgcgacggtgcggatcgcggcgaacatcgcctatgaggacgcacaggcgacgatc
gacgctggcgcggggccgatgctggaggcgctgcggccattgtggggctgctggcaggcg
ctggcggcggcgcgcgaccagcgcgagccgctcaatctcgacctgcccgagcggcgcgtg
gtgctggacgagaagggccgcatcatgtcggtcgccccgcgcgagcggctcgacgcgcac
cggctgatcgaggattacatgatcgccgccaacgtcgccgccgccagggcgctggaggcg
aagaaggcgcccgtcatgtaccgagtccacgagccgcccgcgcgcgagaagctggtggcg
ctgaaggactatctcgatacgttcgggatcagcttcgcgttggggcaggtcatcaggccc
gccaccttcaaccgcatcatcgacaaggtaggcgaggccgatttccggccgcagatcatg
gagcaggtgctgcgcacgcagacgcaggcctattacgcccccggcaaccacggccatttc
gggctggcgctgggcagctatgcgcatttcacctcgccgatccgccgctatgcggacctg
atggtgcatcgcgcgctcgtctcggcctatgctctcgggccgggcgggcttgccggtgac
gaggatttcgagcggatcggcgaggcgatcagcggcctcgaacgccgcgcgatggaggcg
gagcgcgacacgatcgaccgctatgtcgccgcctatctcgccgagcgcgtcggcgaattg
gtggaggcgcggatcaccggcgtggtcaatttcggcttcttcgcgacggtcgagggcgtc
ggcggcgacgggctgatgccggtgcgcgatctcggcggcgaatatttccgcttcgacgaa
gcctcgcgccggctggtgggagagacgagcggcgaggaatatgtgctcggccagcacctg
cggctgcggctggcggaggcgaacccggtttccggcgcgctgcgcttcgagctgccggag
gggaagggggcgctgccgccgccgcgccgcgacgggccgaggcgggggatcaagcggcgc
ggccgccccgccaacatccggcatcaggggcgcaggaaatga
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