Sphingomonas sp. CL5.1: F9288_19975
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Entry
F9288_19975 CDS
T11042
Name
(Genbank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9288_19975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spcl03019
]
F9288_19975
Enzymes [BR:
spcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F9288_19975
Messenger RNA biogenesis [BR:
spcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F9288_19975
BRITE hierarchy
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Utp25_C
Gasdermin_C
Motif
Other DBs
NCBI-ProteinID:
QKS01638
UniProt:
A0A6N0X800
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All DBs
Position
4165540..4166886
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AA seq
448 aa
AA seq
DB search
MTFSDLGLTDALVRALETKGYETPTPIQRDAIPIVLTGRDLLGIAQTGTGKTAAFVLPSI
QRLADSHKKLLPTHCRMLVLAPTRELASQIAENARAYGRNSRLSVATVFGGTSINKNRND
LSRGVDILVATPGRLLDLVEQGYCNLSMLEILVLDEADQMLDLGFIHALRKIVKMVPRRR
QTLFFSATMPESIRELAGKFLHEPETVSVVPAATTAERVDQFVTFVNQQEKQALLTMLLT
DERIDRALVFTRTKHGADRVVRLLAGNGIAANAIHGNKSQPQRERALVAFRSGEVPILVA
TDIAARGIDISGVSHVLNFELPNVPEQYVHRIGRTARAGASGVAISFCAEDERPYLRDIE
KLTRLRVPVRALPADFLKRGEALKAARVRVAGPDPAPREDRPRGPARPRATHQPVKTRDY
ANASRRRGGGGRGRGGRGRGGQGVPANG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttccgacctcggcctgaccgacgcgctcgtccgcgcgctcgagaccaagggc
tatgagacccccactccgatccagcgcgacgccatcccgatcgtgctgaccggccgcgac
ctgctcggcatcgcgcagaccggcaccggcaagacggcggcgttcgtgctgccctcgatc
cagcggctcgcggattcgcataagaagctgctgccgacgcattgccgcatgctcgtcctc
gcgccgacgcgcgagctggccagccagatcgccgagaacgcgcgcgcctatggccgcaac
tcgcggctgtcggtcgccaccgtgttcggcggcaccagcatcaacaagaacaggaacgac
ctgtcgcgcggcgtcgatatcctcgtcgcgacgcccggccggctgctcgacctggtcgag
cagggctattgcaacctgtcgatgctcgagatcctcgtgctcgacgaggccgaccagatg
ctcgacctcggcttcatccacgcgctgcgcaagatcgtgaagatggtgccgcgccgccgc
cagaccctgttcttctccgccaccatgccggaatcgatccgcgagctggcgggcaagttc
ctgcacgagccggaaacggtgtcggtcgtcccggccgccaccaccgccgagcgcgtcgac
cagttcgtcaccttcgtcaaccagcaggagaagcaggccttgctcaccatgctgctgacc
gacgagcggatcgaccgcgctttggtgttcacccgcaccaagcatggcgcggaccgcgtg
gtgcggctgctcgccggcaacggcatcgccgccaacgcgatccacggtaacaagagccag
ccgcagcgcgagcgcgcgctggtcgcgttccgctcgggcgaggtgccgatcctcgtcgcg
accgacatcgccgcgcgcggcatcgacatctcgggggtgagccatgtgctcaacttcgag
ctgcccaacgtgccggagcaatacgtccaccgcatcggccgcaccgcgcgcgccggggcg
agcggcgtcgccatctccttctgcgcggaggacgaacgcccctatctgcgcgatatcgag
aagctgacgcggctgcgcgtgccggtccgcgcgctgccggcggacttcctcaagcgcggc
gaggcgctgaaggccgcccgcgtccgcgtcgccggccccgatccggccccgcgcgaggat
cgcccgcgcggccccgcccggccgcgcgcgacgcaccagccggtcaagacgcgcgactat
gccaacgccagccgccggcgcggtggcggcggacgtggacgcggcggtcgcggccgtggc
ggtcagggcgtcccggccaacgggtaa
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