Sphingomonas sp. CL5.1: F9288_20545
Help
Entry
F9288_20545 CDS
T11042
Symbol
pnp
Name
(Genbank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9288_20545 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spcl03019
]
F9288_20545 (pnp)
03016 Transfer RNA biogenesis [BR:
spcl03016
]
F9288_20545 (pnp)
Enzymes [BR:
spcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
F9288_20545 (pnp)
Messenger RNA biogenesis [BR:
spcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F9288_20545 (pnp)
Transfer RNA biogenesis [BR:
spcl03016
]
Prokaryotic type
tRNA degradation factors
F9288_20545 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
DUF7357
Motif
Other DBs
NCBI-ProteinID:
QKS01737
LinkDB
All DBs
Position
4293289..4295619
Genome browser
AA seq
776 aa
AA seq
DB search
MFDTQKVSIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATERETLVSRLIDRPVRPLFPEGFYNEINCIAQVLSY
DGENEPDILAMVAASAALTISGVPFMGPIGAARVGYKDGEYQLNPTDAEIAEGELDLVVA
ATHDAVMMVESEAKELSEEVMLGAVLFAHKACQQVVDAIIDLAEKAAKEPWELPANDGQK
ALKAELKKLIGKDITAAYKLTDKQARQTALGEARAKAKAAMADKPAREQLVAGKLVKKLE
ADIVRTAILKDGKRIDGRTTTQVRPIEAEVHFLPRAHGSALFTRGETQTIATTTLGTRDA
EQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKEEF
PYTIRVTSDITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDFAILSDI
LGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKEGRAHILGEMNKAL
GETRTELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISSSD
GAQIEAAMNWIKGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNERVEK
VSDVLKEGQEVKVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPAREPRGDRGDRGPRRD
GGDRGGRGGDRGDRGGDRGDRGPRRDRGPRRERGEGGREDGPAPDFAPAFLTGDRD
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatacccagaaggtaagcatcgagtggggcggaaagaccctcacgctcgaaacg
ggcaaggttgcccgtcaggccgacggcgcggtgatcgcgacgctcggcgaaacggtggtg
ctgtgcgccgtcaccgccgccaagtcggtgaaggaggggcaggatttcttcccgctcacc
gtccattatcaggaaaaattctcgtccgccgggcgcatcccgggcggcttcttcaagcgc
gagcgcggcgcgaccgagcgtgagaccttggtcagccgcctgatcgaccgcccggtccgc
ccgctgttcccggaaggcttctacaacgagatcaactgcatcgcgcaggtgctctcctat
gacggcgagaacgagccggacatcctggcgatggtcgccgcatccgccgcgctcaccatc
tccggcgtgccgttcatggggccgatcggcgccgcgcgcgtcggctacaaggacggcgaa
tatcaactcaacccgaccgatgccgagatcgccgagggcgagctggatctggtcgtcgcc
gccacgcatgacgcggtgatgatggtcgaatccgaagccaaggagctttcggaagaggtg
atgctcggcgcggtgctgttcgcgcacaaggcgtgccagcaggttgtcgacgcgatcatc
gacctcgccgagaaggccgccaaggagccgtgggagcttcccgccaacgacggccagaag
gcgctgaaggccgagctgaagaagctgatcggcaaggacatcaccgccgcctacaagctc
accgacaagcaggcgcgccagaccgcactgggcgaggcgcgcgccaaggcgaaggccgcg
atggccgacaagcccgcgcgggagcagctcgtcgccggcaagctggtgaagaagctggag
gcggatatcgtccgcaccgcgatcctgaaggatggcaagcgcatcgacggccgcaccacc
acgcaggtccgcccgatcgaggcggaggtgcacttcctgccgcgcgcgcacggctccgcc
ctgttcacgcgcggcgagacgcagacaatcgccaccaccacgctcggcacgcgcgacgcg
gagcagatgatcgacgggctgaacggcctctcctaccagcatttcatgctgcactataac
ttcccgccctattcggtcggcgaggttggccgcttcggcgcgccggggcgccgcgaggtc
ggccatggcaagctggcgtggcgcgcgctgcatccggtgctgccgacgaaggaggagttc
ccctatacgatccgcgtcaccagcgacatcacggagtcgaacggctcctcctcgatggcg
acggtgtgcggcggctcgctgagcctgatggacgccggcgtgccgctgaagcgcccggtt
tccggcatcgcgatgggcctgatcctcgaaggcaaggatttcgcgatcctgtccgacatc
ctgggcgacgaggatcacctcggcgacatggacttcaaggtggccggcacgtccgaaggc
atcaccacgatgcagatggacatcaagatcgccggcatcaccaaggagatcttcgaggcc
gcgctggcgcaggccaaggaaggccgcgcgcacatcctgggcgagatgaacaaggcgctg
ggcgaaacccgcaccgagctttccgcccatgccccgcgcatcgaaacgatgcagatcgac
aagtcgaagatccgcgacgtgatcgggaccggcggcaaggtgatccgcgagatcgtcgcc
accaccggtgcgaaggtcgacatcgacgacgagggcgtcatcaagatcagctcgtcggac
ggcgcgcagatcgaggcggcgatgaactggatcaagggcatcgtcgaggaagccgaagtc
ggcaagatctataacggcaaggtcgtcaatctcgtcgatttcggcgcgttcgtgaatttc
atgggcggcaaggacggcctcgtccacgtctccgaaatccgcaacgagcgggtcgagaag
gtgtcggacgtcctgaaggagggccaggaggtcaaggtcaaggtgctggagatcgaccag
cgcggcaaggttcgcctgtcgatgcgcgtcgtagatcaggaaaccggcgccgaactggag
gacacccgcccggcgcgcgaaccgcgcggcgatcgtggtgatcgcggcccgcgccgtgac
ggcggcgaccgtggtggccgtggtggcgatcgcggggaccgcggcggcgaccgtggcgat
cgcggcccccgccgtgaccgcggcccgcgccgcgagcgcggcgaaggcggcagggaagac
ggccccgccccggatttcgctcccgccttcctgaccggcgaccgcgactga
DBGET
integrated database retrieval system
