Streptococcus pneumoniae D39 (virulent serotype 2): SPD_0130
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Entry
SPD_0130 CDS
T00413
Name
(GenBank) metallo-beta-lactamase superfamily protein domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spd
Streptococcus pneumoniae D39 (virulent serotype 2)
Pathway
spd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPD_0130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spd03019
]
SPD_0130
Messenger RNA biogenesis [BR:
spd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPD_0130
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ABJ54456
UniProt:
A0A0H2ZMS9
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Position
complement(134636..136315)
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AA seq
559 aa
AA seq
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MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKL
YEINHNTELTFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
RMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQ
QATEAAVKTGRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTG
SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGK
VNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNG
DVLALTADSARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQM
ILSGPDILSRGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLY
ENTEREPIIIPMILTPDEE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcctacactcttaaacctgaagaagtcggcgtttttgccatcggtggtctaggagaa
atcgggaaaaacacttacggaattgaataccaagacgagattatcatcgtcgatgctggg
attaaattcccagaagatgacttgcttggtatcgactatgtcattcctgactactcttac
atcgtagacaatatcgaccgcgtcaaggctgttttaatcacacacggacacgaggaccac
attggtgggattccgttcctactcaagcaagcaaatgtccctatttatgctggaccgctt
gccttggctttgatccgtgggaaactcgaagaacacggcctcttgcgcaacgccaaactt
tacgaaatcaaccacaacaccgagttgacctttaaaaatctcaaggcaactttctttaga
acgactcactctattccagagcctttggggattgtcattcatactcctcaagggaaaatc
gtctgtacgggtgactttaagttcgactttactccagttggagaacctgcggacttgcat
cgtatggctgcgcttggtgaagaaggcgtgctctgtctcctgtctgactcgacaaatgcg
gaagtaccaacctttaccaactctgaaaaagtcgttggtcagtccattatgaagattatc
caaggtattgaaggacgtatcatctttgcatcctttgcctcaaatatcttccgtctccag
caggcaacagaagctgctgttaagactggacgcaagattgcggtctttggtcgttctatg
gaaaaggccattgtcaacggaatcgatcttggctacatcaaagctcctaagggaaccttt
atcgagccaaatgaaatcaaagattatcctgcaggagaagttcttatcctctgtacaggt
agtcagggtgagcctatggcagccctctctcgtatcgccaacggaacccaccgtcaagta
caattacaaccaggtgataccgttatcttctcttctagtcccatccctggaaacactact
agcgtcaacaagctgattaacatcatttctgaagctggtgtcgaagttatccacggtaaa
gtgaacaatatccatacatctggacacggtggccagcaagagcaaaaactcatgctccgc
ttgattaagccaaaatacttcatgcctgtccacggtgaataccgcatgcaaaaagtccac
gctggactagcagtggatactggtgttgagaaggacaatatctttatcatgagcaatggc
gatgtgcttgcccttactgctgactcagctcgtatcgcaggtcatttcaacgcccaagat
atctatgtcgatggaaatcgtatcggtgaaattggcgcagctgtcctcaaagatcgtcgc
gatctatctgaagacggtgtcgttctagcagtcgcaactgttgacttcaaatcgcagatg
attctgtctggcccagatatcctcagccgaggctttgtctacatgagagagtctggagac
ttgattcgccaaagccagcgtatcctcttcaatgccattcgtatcgcactgaaaaataag
gatgctagcgtgcaatctgtcaatggtgccattgtcaacgctattcgccccttcctctat
gaaaataccgaacgtgaaccgatcatcatcccgatgatcctcacaccagatgaagaataa
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