Streptococcus pneumoniae D39 (virulent serotype 2): SPD_0330
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Entry
SPD_0330 CDS
T00413
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
spd
Streptococcus pneumoniae D39 (virulent serotype 2)
Pathway
spd00521
Streptomycin biosynthesis
spd00523
Polyketide sugar unit biosynthesis
spd00525
Acarbose and validamycin biosynthesis
spd00541
Biosynthesis of various nucleotide sugars
spd01100
Metabolic pathways
spd01110
Biosynthesis of secondary metabolites
spd01250
Biosynthesis of nucleotide sugars
Module
spd_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
spd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SPD_0330 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
SPD_0330 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
SPD_0330 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
SPD_0330 (rfbB)
00525 Acarbose and validamycin biosynthesis
SPD_0330 (rfbB)
Enzymes [BR:
spd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
SPD_0330 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
NAD_binding_4
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_10
NmrA
adh_short
Sacchrp_dh_NADP
KR
Motif
Other DBs
NCBI-ProteinID:
ABJ55108
UniProt:
Q04MA3
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All DBs
Position
329270..330319
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AA seq
349 aa
AA seq
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MTEYKNIIVTGGAGFIGSNFVHYVYENFPDVHVTVLDKLTYAGNRANIEEILGNRVELVV
GDIADAELVDKLAAQADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF
HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFG
VKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGEGKNVRDWIHTNDHSSGVWTI
LTKGQIGETYLIGADGEKNNKEVLELILKEMGQAADAYDHVTDRAGHDLRYAIDASKLRD
ELGWKPEFTNFEAGLKATIKWYTDNQEWWKAEKEAVEANYAKTQEIITV
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatacaaaaatattatcgtgacaggtggagctggctttatcggttctaacttt
gtccattatgtttacgagaactttccagatgttcacgtgacagtcctagataagttgact
tatgctggaaaccgcgcgaatattgaggaaattttaggtaatcgtgttgagttagttgtt
ggtgacattgctgatgcggagttggtagacaagttggctgctcaagcagatgctatcgtt
cattatgcagcggaaagccacaatgataattcgctcaatgatccatcgccatttattcat
actaacttcatcggaacctatactcttttagaagctgctcgtaagtatgatattcgcttc
caccatgtatcgacagatgaagtttatggggatctccctttacgcgaagatttgccaggt
catggtgaaggaccaggtgagaaatttactgctgaaacaaaatacaacccaagctcgcct
tactcatcaaccaaggccgcatcagacttgattgtcaaagcctgggtgcgttcttttgga
gtcaaggcaacgatttccaactgttcaaataactacggtccttatcaacatatcgaaaaa
ttcatcccacgtcagattactaacatcctaagtggaattaagccaaaactttacggtgaa
ggtaagaatgttcgtgactggattcataccaatgaccattcttcaggagtttggacaatc
ttgacaaaagggcaaatcggtgaaacctacttgattggggctgatggtgagaagaacaat
aaggaagttttggagcttatccttaaggaaatgggacaagctgcggatgcctatgatcat
gtgactgaccgtgcaggacatgaccttcgctatgcgattgatgctagcaagctccgtgat
gagttggggtggaaacctgaatttaccaactttgaagctgggctcaaggcaacaatcaag
tggtatacagataaccaagaatggtggaaagcagaaaaagaagctgttgaagccaattat
gctaagactcaggagattattacagtataa
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