Sphingobacterium sp. DR205: G6053_04980
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Entry
G6053_04980 CDS
T06466
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spdr
Sphingobacterium sp. DR205
Pathway
spdr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G6053_04980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spdr03021
]
G6053_04980 (rpoC)
03400 DNA repair and recombination proteins [BR:
spdr03400
]
G6053_04980 (rpoC)
Enzymes [BR:
spdr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G6053_04980 (rpoC)
Transcription machinery [BR:
spdr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G6053_04980 (rpoC)
DNA repair and recombination proteins [BR:
spdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G6053_04980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
MC1
Motif
Other DBs
NCBI-ProteinID:
QIH32291
LinkDB
All DBs
Position
1200713..1204990
Genome browser
AA seq
1425 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLASPETILERSSGEVTKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQAGIKEEDGINFMDFLTEEEYLDILDTLPKENQYLDD
NDPQKFVAKMGAEALEDLLKRIDLDQLSYDLRHQAANETSQQRKNEALKRLHVVEAFRSS
RENIENRPEWMIVKIVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPHLKLHECGLPKDMAAELYKPFIIRKMIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPTLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAVLEAQILMLAAHNILNPANGSPITVPSQDMVLGLYYITKGRKTAGDHIVR
GQDMIFYSAEEVIIALNEKQIDLHAWIKVKTKVRQKDGSIVDTLLETTVGRVIFNQVVPE
EMGFVNELLTKKSLRNIIGEIVKTTGMARAAQFLDDMKELGYQTAFKGGLSFNLEDLNIP
AAKAELIQQATNEVEEVMNNYNMGFITNNERYNQIIDIWTRINNRLTAHVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGTSGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVVEQDCGGLRGIYTTALKDNDDVV
EPLFDRILGRTPLHDVFHPETDELIVSANEDITEEIAEVIEKSGIEGVEIRTVLTCESKR
GVCACCYGRNLASGKRVQLGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAADSSIIS
KYDGRIEFENVRTVSQTNDNGTHQVVLGRSGEVKIIDAHNKIVFQQNIPYGSQLFVEDGG
TVAKGDKLVEWDPYNAVIISEFAGKVEFDAIIEGVTFREESDEQTGHKEKVIIETRDKTK
NPSIKILDKSGEVIRTYNIPVGAHVAVANGVTVKEGGILVKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREMSIESRDGQIKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPSAVQHYIVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VNIEDPGDTRFLEKEAVNKWDFMEENDSLFDKKVVVDAGDSNSLRPGQIVSLRKLREENS
SLKRRDLKLVEVREAIPATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NLLGLKENVIVGHLIPSGTGIRQYSNLIVGSREEYDQLLASKEED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaagataataaaattaaaagcaacttcacttcgattacgatcagcttg
gcttctccagaaactattttggaacgctcaagtggtgaagttacaaaaccggaaacgatt
aactatcgtacctacaaaccagaacgtgatggtttattctgtgagcgtatttttggtcct
gtaaaggattacgaatgtcactgtggtaaatacaaacgtatccgttataaaggtatcgtg
tgtgaccgttgtggtgttgaagtaacggagaaaaaagtacgtcgtgagcgtatgggacac
atcaacttggtggttcctgttgcgcacatctggtacttccgctctcttcctaataaaatc
ggttatttattgggacttcctaccaagaaattggatatgatcatttactatgaacgttat
gtggttatccaagctggtattaaggaagaagatggtatcaactttatggacttcttgact
gaagaagaatatttagatattttagatactttaccaaaagaaaatcaatatttagacgat
aacgatcctcaaaaatttgtcgctaagatgggggctgaggcgttggaagatttgttgaaa
cgtattgatttggatcaattatcttacgatttacgtcaccaagctgctaacgagacttcg
caacaacgtaaaaatgaggcgttaaaacgtcttcatgttgttgaagctttccgtagctca
cgtgaaaatatcgagaatcgtccagaatggatgatcgtaaagattgttccaatcattccg
cctgaattgcgccctttggtgcctttggatggtggccgttttgcgacttcggatttgaac
gacttataccgtcgtgtgattatccgtaacaaccgtctaaaacgtttgattgaaatcaaa
gctccagaagtaatcttacgtaacgaaaaacgtatgcttcaagaagcggtagattcattg
tttgacaactcgcgtaaagtgaatgctgttaagactgaaggtaaccgcgcgttgaagtct
ttgtctgatattttgaaaggtaaacaagggcgtttccgtcaaaacttattaggtaagcgt
gtggattattcggctcgttcggtaattgtggtaggtcctcacttgaaattacacgagtgt
ggtcttcctaaagatatggctgctgaactttacaaaccgtttatcatccgtaagatgatc
gagcgtggtattgtgaaaacagtaaaatcagctaaaaaaatcgtagatcgtaaagatccg
gttgtatgggatatccttgaaaacgtattgaaaggtcaccctgtattactaaaccgtgca
cctacgcttcaccgtttgggtattcaagctttccagcctaccttggtagagggtaaagcg
attcaattacacccattggtgtgtacagcgttcaacgccgattttgacggtgaccagatg
gcggttcacttacctctaggtaatgccgcagttttggaagcccaaattttgatgttggca
gcacacaatatcttaaatcctgcgaacggttcgccgatcacagtaccatctcaagacatg
gtattgggtctttactatattactaaaggccgtaaaactgctggtgatcatatcgtaaga
ggtcaagatatgattttctattcggctgaagaggtcatcattgctttaaatgagaagcaa
atcgatcttcacgcttggattaaagtaaaaacaaaagttagacaaaaagatggtagcatc
gttgataccttattagaaacaactgtgggtcgtgtgatcttcaaccaagttgttcctgaa
gaaatgggatttgtcaatgaattgcttaccaaaaaatctttgcgtaatatcatcggtgag
attgtgaagactacgggtatggctcgtgcagcgcaattcttggatgatatgaaagaattg
ggatatcaaacagccttcaaaggtggtctttctttcaacttggaagatttgaacattcct
gctgcgaaagctgagttgatccaacaagcaacgaacgaagttgaagaagtgatgaacaac
tataacatgggtttcattaccaacaacgaacgttacaatcaaatcatcgatatctggacg
cgtatcaacaatagattgacagcgcacgtaatggatattctttctaacgataatcaaggt
ttcaactcagtttatatgatgttggattctggagcccgtggttcgaaagagcagatccgt
cagttatgtggtatgcgtggtctgatggcgaaacctcaaaaatccggtacttcaggtggt
gagattattgaaaacccgatcctgtcaaactttaaagaaggtttgtccgtattggagtac
tttatctctacccacggtgcgcgtaaaggtcttgcggatacggcgttgaaaacggcggat
gcgggttacttgactcgtcgtttacatgacgttgctcaggatatgatcgttgtggagcaa
gattgtggtggtttacgtggtatttacacaacagcattaaaagataatgatgatgtagtt
gagccattgttcgatcgtattttgggtcgtacaccattacatgatgtattccatccggaa
acagatgagttaattgtttctgcaaacgaagatatcacggaggaaatcgctgaagtcatc
gagaaatcaggtattgagggtgtcgaaattcgtactgtattaacttgtgaatcgaaacgt
ggtgtgtgtgcttgttgttacggtcgtaacttggcgtccggtaaacgtgttcaattgggt
gaagctgtcggtgttatcgcagctcaatcaatcggtgagccgggtacacagttaacactt
cgtacgttccacgtgggtggtacggcatcaaacatcgccgcagactcaagcatcatttct
aaatacgatggtagaatcgaatttgaaaatgtgcgtaccgtttcgcaaacaaatgacaat
ggtacacatcaagtcgttttaggacgttctggtgaggttaagatcattgatgcacataat
aaaattgtattccaacaaaatatcccttacggttcgcaattgttcgttgaagacggtggt
actgtagctaaaggggataaattggtagaatgggatccatataacgcggtaattatctct
gaatttgctggtaaagttgagtttgatgcaatcatcgaaggtgttaccttccgtgaagaa
tcagatgagcaaactggtcacaaagagaaagtaattattgaaacacgtgataaaacgaaa
aacccatccatcaagattcttgataaatccggagaggttatccgtacgtacaatataccg
gtgggcgcccacgttgctgttgctaacggggtgactgtgaaagaaggtggtatcttagtt
aagattcctcgttctactggtaaaacacgagatatcacgggtggtcttccacgtgtaacc
gagctattcgaagcacgtaacccttctaaccctgctgtcgtgacagaaatcgatggtgtg
gtaacattaggtggtgtgaaacgtggtaaccgtgagatgtcgatagaatcacgtgatggt
caaatcaagaaatacttggtgccactttctaaacatatccttgttcaggataatgacttt
gtgaaagcaggtatgccattatcggatggttcgatttctccagcagatatcttatcgatt
aaaggaccgtcagcggtgcaacattacatcgtgaatggtatccaagaggtataccgtctt
caaggtgtgaagatcaacgataagcacttcgaaacgatcgttcaccagatgatgcaaaaa
gttaacattgaggatccgggagatacacgtttcttagaaaaagaagctgtaaacaaatgg
gacttcatggaagagaatgattctttgtttgacaaaaaagtcgttgtcgatgcgggagat
tccaatagcttacgtccaggacaaattgtttctttacgtaagttgagagaggagaattca
agcttgaaacgtcgtgacttaaaacttgtagaagtgcgtgaagcaattccagcaacttca
agtccattgttgcaaggtatcactagagcatcgttgggtacgaaatcgttcatctcagcg
gcctctttccaagagactactaaagtgttgaacgaagctgctatcgctggtaaacgtgac
aacttgttaggtttgaaagaaaacgtaatcgttggtcacttgatcccttcaggtacaggt
atccgtcaatacagcaacttaattgtcggttctcgtgaagaatacgatcaattgttggct
tcgaaagaagaagattaa
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