Sphingobacterium sp. DR205: G6053_08675
Help
Entry
G6053_08675 CDS
T06466
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spdr
Sphingobacterium sp. DR205
Pathway
spdr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G6053_08675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spdr03400
]
G6053_08675 (ligD)
Enzymes [BR:
spdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G6053_08675 (ligD)
DNA repair and recombination proteins [BR:
spdr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G6053_08675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_C
Bunya_G1
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QIH32959
UniProt:
A0A6G7BSX2
LinkDB
All DBs
Position
2079258..2081960
Genome browser
AA seq
900 aa
AA seq
DB search
MGLTKYRNKRTAEKTPEPFGGKPNGKELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSLDPTIKRLAMMVEDHPYDYRNFEGIIPKGQYGGGTVIVWDQGTYESVEGAKDDIATMD
KSLRHQLYSGKLKFRLHGKKLKGEFALVKAHGRGDNGWLLMKLEDKYASDQDITKKDKSV
ISGKTIAQMEKSPDKVYGKSIVKKDSTLKDKHSTTKKAAEMISEQLEAKPGEQLETQAVP
DKLLKKSPKQAFYSHIEPMLATLVDKPFDNGDWVYEVKWDGYRAVAFMHKGDVELKSRND
KSFNEKFYPIYDQLKEIKLNAIMDGEVVVLDKNGVANFGGLQNWRSEADGDLVYYVFDIL
WYEGKDLKNLSLLERKAILKTVLPQSEQILFSEHFDTSGADFLKEAKKLGLEGIMAKRKY
SSYHVNNRSHDWLKIKANKRQEVVIGGYTLNDDSSKLFSSLLVGIYEEKKLIYTGKVGTG
FNAKMQKEMMTLFKPLIIEETPFTEEPNVNKPSRFRPNPPHASVTWLRPELVCEVSFTEI
TNDGVMRHPSFVGMREDKNPKKIMLEKEEPVQQIVEDKTNHMVKSRMAGGRKTLLNPTEK
TQVKKINKQELKFTNLDKIFWPKEKITKGDLINYYYQVAPFILPYLKGRPQSMNRFPNGI
NGEGFYFKDVTDTAPDWAELYLYQSEADNRDRHYLVGKDEATLLYMANLGCIEMNPWNST
IKKPDHPTYCIIDLDPDKNSFDQVIEAAQVTKQILDSMGVPSYCKTSGSTGLHIYIPLGN
KYTYDQAKEFARIIVTLVHAEIPAYTSLERTVRDRKGKMYLDFLQNRPHATIASVYSVRP
KPGATISMPLHWDEVKKGLKMTDFTIFNAMERITSMGDIFKPVLGKGIDLKKIIGAYSAK
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggattaacgaaatatagaaacaaacgcactgccgaaaaaacaccggaaccctttggc
ggaaagccgaacggcaaggaactgaggtttgtcgtacagaaacatgatgcctctcatttg
cattatgatttccgcttggagatggatggagtactgaaaagctgggcagtgccaaaaggg
ccttcgctggatccaacgatcaagcgacttgctatgatggtcgaagatcatccctatgat
taccgaaatttcgagggaattatacctaaaggtcaatacggtggcggaactgtgatcgtt
tgggatcaaggaacatatgagtccgtagaaggtgcaaaggatgatatcgccactatggac
aaaagtctcagacaccagctctattccggaaaactaaaattcaggcttcatggaaaaaag
ctgaaaggagagtttgcgctggtcaaggctcatggacggggggataatggctggttgctg
atgaaacttgaggataaatatgccagcgatcaggatatcacaaaaaaagataaatccgtt
atctccggtaagaccatcgcacagatggaaaaatcaccagataaggtatatgggaaaagc
attgttaaaaaagatagcacactaaaagataaacacagtacaacaaaaaaagctgctgaa
atgattagcgaacagcttgaagcaaagcctggagaacaattagaaactcaggcggtgcca
gataaactgttgaaaaaatctcccaagcaagccttttatagtcatattgaacctatgctt
gcaaccttggttgataaaccttttgacaatggtgactgggtttatgaagttaaatgggac
ggttatcgggcagttgcttttatgcataaaggggacgtggaattgaagtctagaaatgac
aagagtttcaatgaaaagttttaccctatttacgatcagctcaaggaaataaaactcaat
gcgattatggatggggaagtggttgtattggataaaaatggtgttgcaaatttcggaggt
ctgcagaattggcgcagtgaagccgatggtgatcttgtctattatgtatttgatatcttg
tggtatgagggtaaagatttaaagaacctatctcttctcgaaagaaaagccattttaaaa
acagtacttccgcaaagcgaacaaattcttttcagtgagcattttgatacttccggagcc
gactttcttaaggaggcgaaaaagctaggcttggaagggatcatggctaagcgaaaatat
agtagctatcacgtgaataatcgctcacatgactggttaaaaattaaagccaataagcgt
caggaagttgttattggtggttataccctaaacgatgattcaagtaagttatttagtagc
ctgcttgtaggcatatacgaagagaaaaaactcatttataccggaaaggttggtaccggt
ttcaatgctaagatgcaaaaagaaatgatgacattatttaagccattgattatagaagag
acaccttttacagaagagcctaatgtcaataaaccttcgcgcttccgtcccaatccacca
cacgcatcggtgacttggttgcgacctgaactcgtatgtgaggttagttttacggaaata
acgaatgatggcgttatgcgacatccttcgtttgttggtatgcgggaagataaaaatcca
aagaaaataatgctcgaaaaggaagagccagtacaacagattgttgaagataaaacgaat
catatggttaaatcgcgtatggctggaggacgcaagactttgttaaatccaacagagaaa
acccaagtaaaaaaaatcaataagcaggagctcaagtttaccaatcttgacaagattttt
tggccaaaggaaaagatcaccaaaggcgaccttatcaattattattaccaggttgccccc
tttatcttaccatacctaaaaggtaggccgcaaagcatgaaccgattcccaaatggtatc
aatggagaggggttctatttcaaagatgttaccgataccgcaccggattgggccgaactt
tatttatatcaaagtgaggcggataatcgagatcgacattatttagtcggaaaggatgag
gcaacgttattgtatatggccaatttaggttgtatcgaaatgaatccatggaatagcacg
ataaaaaaaccggatcatccaacctactgtatcattgatcttgatccagataaaaactct
ttcgatcaggtgatcgaagcagctcaggtgaccaagcagatcctggacagtatgggcgtt
cccagttattgcaagactagtggctcgacggggctccacatttatatccctttgggaaac
aaatacacatatgatcaggctaaagaatttgcccgcatcatcgttacgttggtacatgct
gaaattccagcctatactagtctcgaacgcacggtacgtgaccgaaaagggaaaatgtac
ctggattttcttcaaaatagacctcatgcgaccattgcgtctgtctattcggtcagaccc
aaacccggcgctaccatatccatgccgcttcactgggatgaggtgaagaagggcttaaaa
atgaccgattttactatttttaatgcaatggaacggataactagtatgggtgatattttt
aaacccgtattaggcaagggaatcgatctcaagaagatcatcggtgcctattctgcgaaa
taa
DBGET
integrated database retrieval system
